Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATAD2_chr8_123314850_123401447	0/0	t0004	1375	2	2	0	0	0	0	copy fasta	ATAD2	chr8	123314850	123401447
ATAD2_chr8_123314850_123401447	0/0	t0005	1375	1	0	0	0	0	1	copy fasta	ATAD2	chr8	123314850	123401447
ATAD2_chr8_123314850_123401447	0/0	t0006	1375	1	0	1	0	0	0	copy fasta	ATAD2	chr8	123314850	123401447
ATAD2_chr8_123314850_123401447	0/0	t0007	1375	1	1	0	0	0	0	copy fasta	ATAD2	chr8	123314850	123401447
ATAD2_chr8_123314850_123401447	0/0	t0008	1375	1	1	0	0	0	0	copy fasta	ATAD2	chr8	123314850	123401447
ATAD2_chr8_123314850_123401447	0/0	t0009	1375	1	0	0	1	0	0	copy fasta	ATAD2	chr8	123314850	123401447
ATAD2_chr8_123314850_123401447	0/0	t0010	1375	1	1	0	0	0	0	copy fasta	ATAD2	chr8	123314850	123401447
ATAD2_chr8_123314850_123401447	0/0	t0011	1375	1	0	0	1	0	0	copy fasta	ATAD2	chr8	123314850	123401447
ATAD2_chr8_123314850_123401447	0/0	t0012	1375	1	0	0	0	0	1	copy fasta	ATAD2	chr8	123314850	123401447
ATAD2_chr8_123314850_123401447	0/0	t0013	1375	1	1	0	0	0	0	copy fasta	ATAD2	chr8	123314850	123401447
ATAD2_chr8_123314850_123401447	0/0	t0014	1375	1	0	0	1	0	0	copy fasta	ATAD2	chr8	123314850	123401447
ATAD3A_chr1_1507162_1539685	0/0	t0001	721	260	51	35	141	7	26	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	t0002	721	38	5	18	3	4	8	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	t0003	721	19	4	6	6	1	2	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	t0004	721	17	0	3	12	0	2	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	t0005	721	15	11	3	0	0	1	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	t0006	721	14	1	7	0	4	2	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	t0007	721	10	0	5	3	1	1	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	t0008	721	5	5	0	0	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	t0009	721	5	1	1	2	0	1	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	t0010	721	5	5	0	0	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	t0011	721	4	0	0	4	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	t0012	721	3	2	1	0	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	t0013	721	3	0	2	0	0	1	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	t0014	721	3	0	1	0	0	2	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	t0015	721	2	2	0	0	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	t0016	721	2	2	0	0	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	t0017	721	1	1	0	0	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	t0018	721	1	1	0	0	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	t0019	721	1	1	0	0	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	t0020	721	1	1	0	0	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	t0021	721	1	0	0	1	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	t0022	721	1	0	0	0	1	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	t0023	721	1	0	0	1	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	t0024	721	1	0	1	0	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	t0025	721	1	0	0	1	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	t0026	721	1	0	0	1	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	t0027	721	1	0	0	1	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	t0028	721	1	0	1	0	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	t0029	721	1	1	0	0	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	t0030	721	1	0	0	0	0	1	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	t0031	721	1	0	0	0	0	1	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3B_chr1_1466765_1502848	0/0	t0001	2152	61	9	11	35	2	4	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	t0002	2150	59	9	1	39	0	10	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	1/1	t0003	2152	52	1	25	0	8	16	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	t0004	2150	14	0	5	9	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	t0005	2151	14	14	0	0	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	t0006	2152	13	0	3	7	1	2	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	t0007	2150	7	7	0	0	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	t0008	2152	6	5	1	0	0	0	copy fasta	ATAD3B	chr1	1466765	1502848