JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
PCYT1B_chrX_24553087_24652347	0/0	t0036	4456	2	0	0	2	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0037	4458	1	0	0	1	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0038	4450	1	0	0	0	1	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0039	4461	1	0	0	1	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0040	4454	1	0	0	1	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0041	4458	1	0	0	1	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0042	4454	1	1	0	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0043	4457	1	0	0	1	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0044	4449	1	0	0	0	1	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0045	4458	1	0	0	1	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0046	4459	1	1	0	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0047	4457	1	0	0	1	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0048	4457	1	0	1	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0049	4455	1	0	0	1	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0050	4456	1	0	1	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0051	4457	1	0	1	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0052	4452	1	0	1	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0053	4452	1	0	0	0	1	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0054	4457	1	1	0	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0055	4457	1	0	0	0	1	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0056	4457	1	1	0	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0057	4457	1	0	0	1	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0058	4457	1	0	0	1	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0059	4452	1	1	0	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0060	4457	1	0	0	0	1	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0061	4458	1	0	1	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0062	4452	1	0	0	1	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0063	4445	1	1	0	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0064	4456	1	1	0	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0065	4449	1	1	0	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0066	4448	1	1	0	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0067	4456	1	1	0	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0068	4456	1	1	0	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0069	4454	1	1	0	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0070	4457	1	1	0	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0071	4456	1	1	0	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0072	4456	1	1	0	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0073	4456	1	0	1	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0074	4448	1	1	0	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0075	4458	1	0	1	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0076	4452	1	0	0	1	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0077	4453	1	0	1	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	1/0	t0078	4449	1	0	0	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0079	4452	1	0	1	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0080	4450	1	1	0	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0081	4447	1	1	0	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0082	4450	1	0	0	0	1	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0083	4456	1	1	0	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0084	4457	1	1	0	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0085	4456	1	1	0	0	0	copy fasta	PCYT1B	chrX	24553087	24652347