JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PCYT1B_chrX_24553087_24652347	0/0	t0086	4449	1	1	0	0	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0087	4458	1	1	0	0	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0088	4456	1	1	0	0	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0089	4448	1	1	0	0	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0090	4448	1	1	0	0	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0091	4448	1	1	0	0	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0092	4458	1	1	0	0	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0093	4457	1	1	0	0	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0094	4456	1	0	0	0	1	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0095	4457	1	0	0	1	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0096	4456	1	0	0	0	1	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0097	4450	1	0	0	0	0	1	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0098	4456	1	1	0	0	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0099	4456	1	0	0	1	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0100	4455	1	0	0	1	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0101	4457	1	0	0	1	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0102	4456	1	0	0	1	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0103	4453	1	0	0	1	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0104	4446	1	0	1	0	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0105	4448	1	1	0	0	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT2_chr17_81895958_81916399	1/0	t0001	3920	215	58	40	84	4	28	copy fasta	PCYT2	chr17	81895958	81916399
PCYT2_chr17_81895958_81916399	0/0	t0002	3920	8	0	0	3	1	4	copy fasta	PCYT2	chr17	81895958	81916399
PCYT2_chr17_81895958_81916399	0/0	t0003	3920	7	0	1	6	0	0	copy fasta	PCYT2	chr17	81895958	81916399
PCYT2_chr17_81895958_81916399	0/1	t0004	3920	7	0	2	0	1	3	copy fasta	PCYT2	chr17	81895958	81916399
PCYT2_chr17_81895958_81916399	0/0	t0005	3920	5	5	0	0	0	0	copy fasta	PCYT2	chr17	81895958	81916399
PCYT2_chr17_81895958_81916399	0/0	t0006	3920	4	0	2	0	0	2	copy fasta	PCYT2	chr17	81895958	81916399
PCYT2_chr17_81895958_81916399	0/0	t0007	3920	4	1	3	0	0	0	copy fasta	PCYT2	chr17	81895958	81916399
PCYT2_chr17_81895958_81916399	0/0	t0008	3920	4	3	1	0	0	0	copy fasta	PCYT2	chr17	81895958	81916399
PCYT2_chr17_81895958_81916399	0/0	t0009	3917	3	0	0	3	0	0	copy fasta	PCYT2	chr17	81895958	81916399
PCYT2_chr17_81895958_81916399	0/0	t0010	3920	3	3	0	0	0	0	copy fasta	PCYT2	chr17	81895958	81916399
PCYT2_chr17_81895958_81916399	0/0	t0011	3920	2	0	1	0	0	1	copy fasta	PCYT2	chr17	81895958	81916399
PCYT2_chr17_81895958_81916399	0/0	t0012	3920	2	0	0	2	0	0	copy fasta	PCYT2	chr17	81895958	81916399
PCYT2_chr17_81895958_81916399	0/0	t0013	3920	2	1	1	0	0	0	copy fasta	PCYT2	chr17	81895958	81916399
PCYT2_chr17_81895958_81916399	0/0	t0014	3920	2	0	0	2	0	0	copy fasta	PCYT2	chr17	81895958	81916399
PCYT2_chr17_81895958_81916399	0/0	t0015	3920	2	2	0	0	0	0	copy fasta	PCYT2	chr17	81895958	81916399
PCYT2_chr17_81895958_81916399	0/0	t0016	3920	2	2	0	0	0	0	copy fasta	PCYT2	chr17	81895958	81916399
PCYT2_chr17_81895958_81916399	0/0	t0017	3920	2	2	0	0	0	0	copy fasta	PCYT2	chr17	81895958	81916399
PCYT2_chr17_81895958_81916399	0/0	t0018	3920	2	1	1	0	0	0	copy fasta	PCYT2	chr17	81895958	81916399
PCYT2_chr17_81895958_81916399	0/0	t0019	3920	1	0	0	0	1	0	copy fasta	PCYT2	chr17	81895958	81916399
PCYT2_chr17_81895958_81916399	0/0	t0020	3920	1	1	0	0	0	0	copy fasta	PCYT2	chr17	81895958	81916399
PCYT2_chr17_81895958_81916399	0/0	t0021	3920	1	1	0	0	0	0	copy fasta	PCYT2	chr17	81895958	81916399
PCYT2_chr17_81895958_81916399	0/0	t0022	3920	1	0	1	0	0	0	copy fasta	PCYT2	chr17	81895958	81916399
PCYT2_chr17_81895958_81916399	0/0	t0023	3920	1	1	0	0	0	0	copy fasta	PCYT2	chr17	81895958	81916399
PCYT2_chr17_81895958_81916399	0/0	t0024	3920	1	0	1	0	0	0	copy fasta	PCYT2	chr17	81895958	81916399
PCYT2_chr17_81895958_81916399	0/0	t0025	3920	1	1	0	0	0	0	copy fasta	PCYT2	chr17	81895958	81916399
PCYT2_chr17_81895958_81916399	0/0	t0026	3920	1	0	0	1	0	0	copy fasta	PCYT2	chr17	81895958	81916399
PCYT2_chr17_81895958_81916399	0/0	t0027	3920	1	0	0	0	1	0	copy fasta	PCYT2	chr17	81895958	81916399
PCYT2_chr17_81895958_81916399	0/0	t0028	3920	1	0	0	1	0	0	copy fasta	PCYT2	chr17	81895958	81916399
PCYT2_chr17_81895958_81916399	0/0	t0029	3920	1	0	0	1	0	0	copy fasta	PCYT2	chr17	81895958	81916399
PCYT2_chr17_81895958_81916399	0/0	t0030	3920	1	1	0	0	0	0	copy fasta	PCYT2	chr17	81895958	81916399