JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PCYT2_chr17_81895958_81916399	0/0	t0031	3920	1	0	0	1	0	0	copy fasta	PCYT2	chr17	81895958	81916399
PCYT2_chr17_81895958_81916399	0/0	t0032	3920	1	1	0	0	0	0	copy fasta	PCYT2	chr17	81895958	81916399
PCYT2_chr17_81895958_81916399	0/0	t0033	3920	1	1	0	0	0	0	copy fasta	PCYT2	chr17	81895958	81916399
PCYT2_chr17_81895958_81916399	0/0	t0034	3920	1	1	0	0	0	0	copy fasta	PCYT2	chr17	81895958	81916399
PCYT2_chr17_81895958_81916399	0/0	t0035	3920	1	0	0	0	0	1	copy fasta	PCYT2	chr17	81895958	81916399
PCYT2_chr17_81895958_81916399	0/0	t0036	3920	1	0	1	0	0	0	copy fasta	PCYT2	chr17	81895958	81916399
PCYT2_chr17_81895958_81916399	0/0	t0037	3920	1	0	1	0	0	0	copy fasta	PCYT2	chr17	81895958	81916399
PCYT2_chr17_81895958_81916399	0/0	t0038	3920	1	0	1	0	0	0	copy fasta	PCYT2	chr17	81895958	81916399
PCYT2_chr17_81895958_81916399	0/0	t0039	3920	1	1	0	0	0	0	copy fasta	PCYT2	chr17	81895958	81916399
PCYT2_chr17_81895958_81916399	0/0	t0040	3920	1	1	0	0	0	0	copy fasta	PCYT2	chr17	81895958	81916399
PCYT2_chr17_81895958_81916399	0/0	t0041	3920	1	0	1	0	0	0	copy fasta	PCYT2	chr17	81895958	81916399
PCYT2_chr17_81895958_81916399	0/0	t0042	3920	1	0	0	0	0	1	copy fasta	PCYT2	chr17	81895958	81916399
PC_chr11_66843420_66963383	1/1	t0001	769	263	66	40	130	7	18	copy fasta	PC	chr11	66843420	66963383
PC_chr11_66843420_66963383	0/0	t0002	769	7	6	1	0	0	0	copy fasta	PC	chr11	66843420	66963383
PC_chr11_66843420_66963383	0/0	t0003	769	2	0	1	0	1	0	copy fasta	PC	chr11	66843420	66963383
PC_chr11_66843420_66963383	0/0	t0004	769	1	1	0	0	0	0	copy fasta	PC	chr11	66843420	66963383
PC_chr11_66843420_66963383	0/0	t0005	769	1	1	0	0	0	0	copy fasta	PC	chr11	66843420	66963383
PDAP1_chr7_99389673_99413597	1/0	t0001	2059	85	3	13	47	6	15	copy fasta	PDAP1	chr7	99389673	99413597
PDAP1_chr7_99389673_99413597	0/0	t0002	2060	66	4	4	44	1	13	copy fasta	PDAP1	chr7	99389673	99413597
PDAP1_chr7_99389673_99413597	0/1	t0003	2058	20	0	0	17	1	1	copy fasta	PDAP1	chr7	99389673	99413597
PDAP1_chr7_99389673_99413597	0/0	t0004	2060	19	15	4	0	0	0	copy fasta	PDAP1	chr7	99389673	99413597
PDAP1_chr7_99389673_99413597	0/0	t0005	2065	19	12	0	0	3	4	copy fasta	PDAP1	chr7	99389673	99413597
PDAP1_chr7_99389673_99413597	0/0	t0006	2057	12	6	1	4	1	0	copy fasta	PDAP1	chr7	99389673	99413597
PDAP1_chr7_99389673_99413597	0/0	t0007	2060	10	1	4	3	0	2	copy fasta	PDAP1	chr7	99389673	99413597
PDAP1_chr7_99389673_99413597	0/0	t0008	2060	8	0	3	4	0	1	copy fasta	PDAP1	chr7	99389673	99413597
PDAP1_chr7_99389673_99413597	0/0	t0009	2061	7	1	0	5	0	1	copy fasta	PDAP1	chr7	99389673	99413597
PDAP1_chr7_99389673_99413597	0/0	t0010	2066	6	6	0	0	0	0	copy fasta	PDAP1	chr7	99389673	99413597
PDAP1_chr7_99389673_99413597	0/0	t0011	2060	6	0	1	2	2	1	copy fasta	PDAP1	chr7	99389673	99413597
PDAP1_chr7_99389673_99413597	0/0	t0012	2060	4	0	0	4	0	0	copy fasta	PDAP1	chr7	99389673	99413597
PDAP1_chr7_99389673_99413597	0/0	t0013	2058	4	4	0	0	0	0	copy fasta	PDAP1	chr7	99389673	99413597
PDAP1_chr7_99389673_99413597	0/0	t0014	2061	4	4	0	0	0	0	copy fasta	PDAP1	chr7	99389673	99413597
PDAP1_chr7_99389673_99413597	0/0	t0015	2062	3	3	0	0	0	0	copy fasta	PDAP1	chr7	99389673	99413597
PDAP1_chr7_99389673_99413597	0/0	t0016	2059	3	3	0	0	0	0	copy fasta	PDAP1	chr7	99389673	99413597
PDAP1_chr7_99389673_99413597	0/0	t0017	2060	3	2	1	0	0	0	copy fasta	PDAP1	chr7	99389673	99413597
PDAP1_chr7_99389673_99413597	0/0	t0018	2059	3	2	0	1	0	0	copy fasta	PDAP1	chr7	99389673	99413597
PDAP1_chr7_99389673_99413597	0/0	t0019	2062	3	3	0	0	0	0	copy fasta	PDAP1	chr7	99389673	99413597
PDAP1_chr7_99389673_99413597	0/0	t0020	2060	3	3	0	0	0	0	copy fasta	PDAP1	chr7	99389673	99413597
PDAP1_chr7_99389673_99413597	0/0	t0021	2061	3	0	2	1	0	0	copy fasta	PDAP1	chr7	99389673	99413597
PDAP1_chr7_99389673_99413597	0/0	t0022	2061	2	2	0	0	0	0	copy fasta	PDAP1	chr7	99389673	99413597
PDAP1_chr7_99389673_99413597	0/0	t0023	2056	2	0	0	2	0	0	copy fasta	PDAP1	chr7	99389673	99413597
PDAP1_chr7_99389673_99413597	0/0	t0024	2059	2	0	0	2	0	0	copy fasta	PDAP1	chr7	99389673	99413597
PDAP1_chr7_99389673_99413597	0/0	t0025	2057	2	0	0	2	0	0	copy fasta	PDAP1	chr7	99389673	99413597
PDAP1_chr7_99389673_99413597	0/0	t0026	2059	2	2	0	0	0	0	copy fasta	PDAP1	chr7	99389673	99413597
PDAP1_chr7_99389673_99413597	0/0	t0027	2062	2	1	1	0	0	0	copy fasta	PDAP1	chr7	99389673	99413597
PDAP1_chr7_99389673_99413597	0/0	t0028	2058	2	0	1	1	0	0	copy fasta	PDAP1	chr7	99389673	99413597
PDAP1_chr7_99389673_99413597	0/0	t0029	2061	2	0	1	1	0	0	copy fasta	PDAP1	chr7	99389673	99413597
PDAP1_chr7_99389673_99413597	0/0	t0030	2061	2	0	0	1	0	1	copy fasta	PDAP1	chr7	99389673	99413597
PDAP1_chr7_99389673_99413597	0/0	t0031	2060	1	1	0	0	0	0	copy fasta	PDAP1	chr7	99389673	99413597
PDAP1_chr7_99389673_99413597	0/0	t0032	2063	1	1	0	0	0	0	copy fasta	PDAP1	chr7	99389673	99413597
PDAP1_chr7_99389673_99413597	0/0	t0033	2059	1	0	0	1	0	0	copy fasta	PDAP1	chr7	99389673	99413597