JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PDAP1_chr7_99389673_99413597	0/0	t0034	2058	1	0	0	0	0	1	copy fasta	PDAP1	chr7	99389673	99413597
PDAP1_chr7_99389673_99413597	0/0	t0035	2057	1	1	0	0	0	0	copy fasta	PDAP1	chr7	99389673	99413597
PDAP1_chr7_99389673_99413597	0/0	t0036	2059	1	0	0	1	0	0	copy fasta	PDAP1	chr7	99389673	99413597
PDAP1_chr7_99389673_99413597	0/0	t0037	2061	1	0	0	1	0	0	copy fasta	PDAP1	chr7	99389673	99413597
PDAP1_chr7_99389673_99413597	0/0	t0038	2062	1	0	0	1	0	0	copy fasta	PDAP1	chr7	99389673	99413597
PDAP1_chr7_99389673_99413597	0/0	t0039	2065	1	0	0	1	0	0	copy fasta	PDAP1	chr7	99389673	99413597
PDAP1_chr7_99389673_99413597	0/0	t0040	2058	1	0	0	1	0	0	copy fasta	PDAP1	chr7	99389673	99413597
PDAP1_chr7_99389673_99413597	0/0	t0041	2064	1	1	0	0	0	0	copy fasta	PDAP1	chr7	99389673	99413597
PDAP1_chr7_99389673_99413597	0/0	t0042	2063	1	1	0	0	0	0	copy fasta	PDAP1	chr7	99389673	99413597
PDAP1_chr7_99389673_99413597	0/0	t0043	2060	1	1	0	0	0	0	copy fasta	PDAP1	chr7	99389673	99413597
PDAP1_chr7_99389673_99413597	0/0	t0044	2061	1	0	0	1	0	0	copy fasta	PDAP1	chr7	99389673	99413597
PDAP1_chr7_99389673_99413597	0/0	t0045	2059	1	1	0	0	0	0	copy fasta	PDAP1	chr7	99389673	99413597
PDAP1_chr7_99389673_99413597	0/0	t0046	2061	1	0	0	1	0	0	copy fasta	PDAP1	chr7	99389673	99413597
PDAP1_chr7_99389673_99413597	0/0	t0047	2060	1	0	0	0	0	1	copy fasta	PDAP1	chr7	99389673	99413597
PDAP1_chr7_99389673_99413597	0/0	t0048	2061	1	0	0	0	0	1	copy fasta	PDAP1	chr7	99389673	99413597
PDAP1_chr7_99389673_99413597	0/0	t0049	2064	1	1	0	0	0	0	copy fasta	PDAP1	chr7	99389673	99413597
PDAP1_chr7_99389673_99413597	0/0	t0050	2066	1	0	1	0	0	0	copy fasta	PDAP1	chr7	99389673	99413597
PDAP1_chr7_99389673_99413597	0/0	t0051	2059	1	0	1	0	0	0	copy fasta	PDAP1	chr7	99389673	99413597
PDAP1_chr7_99389673_99413597	0/0	t0052	2059	1	0	0	1	0	0	copy fasta	PDAP1	chr7	99389673	99413597
PDAP1_chr7_99389673_99413597	0/0	t0053	2062	1	0	0	1	0	0	copy fasta	PDAP1	chr7	99389673	99413597
PDAP1_chr7_99389673_99413597	0/0	t0054	2063	1	0	0	1	0	0	copy fasta	PDAP1	chr7	99389673	99413597
PDAP1_chr7_99389673_99413597	0/0	t0055	2059	1	1	0	0	0	0	copy fasta	PDAP1	chr7	99389673	99413597
PDCD10_chr3_167678298_167739892	1/0	t0001	1495	95	12	14	57	3	8	copy fasta	PDCD10	chr3	167678298	167739892
PDCD10_chr3_167678298_167739892	0/0	t0002	1493	65	33	4	22	3	3	copy fasta	PDCD10	chr3	167678298	167739892
PDCD10_chr3_167678298_167739892	0/1	t0003	1493	58	28	11	11	2	5	copy fasta	PDCD10	chr3	167678298	167739892
PDCD10_chr3_167678298_167739892	0/0	t0004	1495	49	5	4	37	0	3	copy fasta	PDCD10	chr3	167678298	167739892
PDCD10_chr3_167678298_167739892	0/0	t0005	1497	5	0	0	5	0	0	copy fasta	PDCD10	chr3	167678298	167739892
PDCD10_chr3_167678298_167739892	0/0	t0006	1497	4	0	0	4	0	0	copy fasta	PDCD10	chr3	167678298	167739892
PDCD10_chr3_167678298_167739892	0/0	t0007	1495	3	0	0	3	0	0	copy fasta	PDCD10	chr3	167678298	167739892
PDCD10_chr3_167678298_167739892	0/0	t0008	1493	1	1	0	0	0	0	copy fasta	PDCD10	chr3	167678298	167739892
PDCD10_chr3_167678298_167739892	0/0	t0009	1493	1	0	0	1	0	0	copy fasta	PDCD10	chr3	167678298	167739892
PDCD10_chr3_167678298_167739892	0/0	t0010	1493	1	1	0	0	0	0	copy fasta	PDCD10	chr3	167678298	167739892
PDCD10_chr3_167678298_167739892	0/0	t0011	1493	1	0	1	0	0	0	copy fasta	PDCD10	chr3	167678298	167739892
PDCD10_chr3_167678298_167739892	0/0	t0012	1493	1	0	0	0	0	1	copy fasta	PDCD10	chr3	167678298	167739892
PDCD11_chr10_103391626_103451294	1/1	t0001	862	337	84	59	145	12	35	copy fasta	PDCD11	chr10	103391626	103451294
PDCD11_chr10_103391626_103451294	0/0	t0002	862	18	1	4	13	0	0	copy fasta	PDCD11	chr10	103391626	103451294
PDCD11_chr10_103391626_103451294	0/0	t0003	861	4	0	1	0	2	1	copy fasta	PDCD11	chr10	103391626	103451294
PDCD11_chr10_103391626_103451294	0/0	t0004	862	1	1	0	0	0	0	copy fasta	PDCD11	chr10	103391626	103451294
PDCD11_chr10_103391626_103451294	0/0	t0005	862	1	1	0	0	0	0	copy fasta	PDCD11	chr10	103391626	103451294
PDCD11_chr10_103391626_103451294	0/0	t0006	862	1	1	0	0	0	0	copy fasta	PDCD11	chr10	103391626	103451294
PDCD1LG2_chr9_5505531_5576282	1/1	t0001	1611	215	46	30	106	4	27	copy fasta	PDCD1LG2	chr9	5505531	5576282
PDCD1LG2_chr9_5505531_5576282	0/0	t0002	1611	92	9	27	38	4	14	copy fasta	PDCD1LG2	chr9	5505531	5576282
PDCD1LG2_chr9_5505531_5576282	0/0	t0003	1611	33	6	2	21	1	3	copy fasta	PDCD1LG2	chr9	5505531	5576282
PDCD1LG2_chr9_5505531_5576282	0/0	t0004	1611	18	0	2	16	0	0	copy fasta	PDCD1LG2	chr9	5505531	5576282
PDCD1LG2_chr9_5505531_5576282	0/0	t0005	1611	6	4	2	0	0	0	copy fasta	PDCD1LG2	chr9	5505531	5576282
PDCD1LG2_chr9_5505531_5576282	0/0	t0006	1611	6	6	0	0	0	0	copy fasta	PDCD1LG2	chr9	5505531	5576282
PDCD1LG2_chr9_5505531_5576282	0/0	t0007	1611	6	6	0	0	0	0	copy fasta	PDCD1LG2	chr9	5505531	5576282
PDCD1LG2_chr9_5505531_5576282	0/0	t0008	1611	5	0	0	5	0	0	copy fasta	PDCD1LG2	chr9	5505531	5576282
PDCD1LG2_chr9_5505531_5576282	0/0	t0009	1611	4	4	0	0	0	0	copy fasta	PDCD1LG2	chr9	5505531	5576282
PDCD1LG2_chr9_5505531_5576282	0/0	t0010	1611	4	0	0	4	0	0	copy fasta	PDCD1LG2	chr9	5505531	5576282