JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PDCD1LG2_chr9_5505531_5576282	0/0	t0011	1611	3	2	1	0	0	0	copy fasta	PDCD1LG2	chr9	5505531	5576282
PDCD1LG2_chr9_5505531_5576282	0/0	t0012	1611	2	1	1	0	0	0	copy fasta	PDCD1LG2	chr9	5505531	5576282
PDCD1LG2_chr9_5505531_5576282	0/0	t0013	1611	2	2	0	0	0	0	copy fasta	PDCD1LG2	chr9	5505531	5576282
PDCD1LG2_chr9_5505531_5576282	0/0	t0014	1611	1	1	0	0	0	0	copy fasta	PDCD1LG2	chr9	5505531	5576282
PDCD1LG2_chr9_5505531_5576282	0/0	t0015	1611	1	1	0	0	0	0	copy fasta	PDCD1LG2	chr9	5505531	5576282
PDCD1LG2_chr9_5505531_5576282	0/0	t0016	1611	1	0	0	1	0	0	copy fasta	PDCD1LG2	chr9	5505531	5576282
PDCD1LG2_chr9_5505531_5576282	0/0	t0017	1611	1	0	0	1	0	0	copy fasta	PDCD1LG2	chr9	5505531	5576282
PDCD1LG2_chr9_5505531_5576282	0/0	t0018	1611	1	0	0	0	1	0	copy fasta	PDCD1LG2	chr9	5505531	5576282
PDCD1LG2_chr9_5505531_5576282	0/0	t0019	1611	1	1	0	0	0	0	copy fasta	PDCD1LG2	chr9	5505531	5576282
PDCD1LG2_chr9_5505531_5576282	0/0	t0020	1611	1	1	0	0	0	0	copy fasta	PDCD1LG2	chr9	5505531	5576282
PDCD1LG2_chr9_5505531_5576282	0/0	t0021	1611	1	0	1	0	0	0	copy fasta	PDCD1LG2	chr9	5505531	5576282
PDCD1LG2_chr9_5505531_5576282	0/0	t0022	1611	1	1	0	0	0	0	copy fasta	PDCD1LG2	chr9	5505531	5576282
PDCD1LG2_chr9_5505531_5576282	0/0	t0023	1611	1	1	0	0	0	0	copy fasta	PDCD1LG2	chr9	5505531	5576282
PDCD1_chr2_241844884_241863894	0/1	t0001	1231	198	40	43	60	15	39	copy fasta	PDCD1	chr2	241844884	241863894
PDCD1_chr2_241844884_241863894	0/0	t0002	1231	152	21	25	98	1	7	copy fasta	PDCD1	chr2	241844884	241863894
PDCD1_chr2_241844884_241863894	0/0	t0003	1231	9	0	0	9	0	0	copy fasta	PDCD1	chr2	241844884	241863894
PDCD1_chr2_241844884_241863894	0/0	t0004	1234	8	0	0	8	0	0	copy fasta	PDCD1	chr2	241844884	241863894
PDCD1_chr2_241844884_241863894	0/0	t0005	1231	7	6	1	0	0	0	copy fasta	PDCD1	chr2	241844884	241863894
PDCD1_chr2_241844884_241863894	0/0	t0006	1231	6	6	0	0	0	0	copy fasta	PDCD1	chr2	241844884	241863894
PDCD1_chr2_241844884_241863894	0/0	t0007	1240	5	5	0	0	0	0	copy fasta	PDCD1	chr2	241844884	241863894
PDCD1_chr2_241844884_241863894	0/0	t0008	1231	4	4	0	0	0	0	copy fasta	PDCD1	chr2	241844884	241863894
PDCD1_chr2_241844884_241863894	0/0	t0009	1231	4	3	1	0	0	0	copy fasta	PDCD1	chr2	241844884	241863894
PDCD1_chr2_241844884_241863894	0/0	t0010	1231	4	3	1	0	0	0	copy fasta	PDCD1	chr2	241844884	241863894
PDCD1_chr2_241844884_241863894	0/0	t0011	1231	3	3	0	0	0	0	copy fasta	PDCD1	chr2	241844884	241863894
PDCD1_chr2_241844884_241863894	0/0	t0012	1231	1	0	0	1	0	0	copy fasta	PDCD1	chr2	241844884	241863894
PDCD1_chr2_241844884_241863894	0/0	t0013	1231	1	0	1	0	0	0	copy fasta	PDCD1	chr2	241844884	241863894
PDCD1_chr2_241844884_241863894	0/0	t0014	1231	1	0	0	1	0	0	copy fasta	PDCD1	chr2	241844884	241863894
PDCD1_chr2_241844884_241863894	0/0	t0015	1231	1	1	0	0	0	0	copy fasta	PDCD1	chr2	241844884	241863894
PDCD1_chr2_241844884_241863894	0/0	t0016	1231	1	1	0	0	0	0	copy fasta	PDCD1	chr2	241844884	241863894
PDCD1_chr2_241844884_241863894	0/0	t0017	1234	1	1	0	0	0	0	copy fasta	PDCD1	chr2	241844884	241863894
PDCD1_chr2_241844884_241863894	0/0	t0018	1231	1	0	0	1	0	0	copy fasta	PDCD1	chr2	241844884	241863894
PDCD2L_chr19_34399399_34431168	1/1	t0001	81	382	90	74	158	16	42	copy fasta	PDCD2L	chr19	34399399	34431168
PDCD2_chr6_170570295_170589637	0/1	t0001	2321	190	25	33	105	6	20	copy fasta	PDCD2	chr6	170570295	170589637
PDCD2_chr6_170570295_170589637	1/0	t0002	2321	118	19	26	42	7	23	copy fasta	PDCD2	chr6	170570295	170589637
PDCD2_chr6_170570295_170589637	0/0	t0003	2321	27	25	2	0	0	0	copy fasta	PDCD2	chr6	170570295	170589637
PDCD2_chr6_170570295_170589637	0/0	t0004	2322	12	10	2	0	0	0	copy fasta	PDCD2	chr6	170570295	170589637
PDCD2_chr6_170570295_170589637	0/0	t0005	2321	4	2	1	0	0	1	copy fasta	PDCD2	chr6	170570295	170589637
PDCD2_chr6_170570295_170589637	0/0	t0006	2319	3	3	0	0	0	0	copy fasta	PDCD2	chr6	170570295	170589637
PDCD2_chr6_170570295_170589637	0/0	t0007	2321	2	0	0	2	0	0	copy fasta	PDCD2	chr6	170570295	170589637
PDCD2_chr6_170570295_170589637	0/0	t0008	2322	2	2	0	0	0	0	copy fasta	PDCD2	chr6	170570295	170589637
PDCD2_chr6_170570295_170589637	0/0	t0009	2321	2	2	0	0	0	0	copy fasta	PDCD2	chr6	170570295	170589637
PDCD2_chr6_170570295_170589637	0/0	t0010	2321	2	0	2	0	0	0	copy fasta	PDCD2	chr6	170570295	170589637
PDCD2_chr6_170570295_170589637	0/0	t0011	2322	1	1	0	0	0	0	copy fasta	PDCD2	chr6	170570295	170589637
PDCD2_chr6_170570295_170589637	0/0	t0012	2321	1	0	1	0	0	0	copy fasta	PDCD2	chr6	170570295	170589637
PDCD2_chr6_170570295_170589637	0/0	t0013	2322	1	0	0	1	0	0	copy fasta	PDCD2	chr6	170570295	170589637
PDCD2_chr6_170570295_170589637	0/0	t0014	2321	1	0	0	0	1	0	copy fasta	PDCD2	chr6	170570295	170589637
PDCD2_chr6_170570295_170589637	0/0	t0015	2321	1	0	0	0	0	1	copy fasta	PDCD2	chr6	170570295	170589637
PDCD2_chr6_170570295_170589637	0/0	t0016	2321	1	1	0	0	0	0	copy fasta	PDCD2	chr6	170570295	170589637
PDCD2_chr6_170570295_170589637	0/0	t0017	2321	1	0	0	0	0	1	copy fasta	PDCD2	chr6	170570295	170589637
PDCD2_chr6_170570295_170589637	0/0	t0018	2321	1	1	0	0	0	0	copy fasta	PDCD2	chr6	170570295	170589637