JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PDCD2_chr6_170570295_170589637	0/0	t0019	2321	1	1	0	0	0	0	copy fasta	PDCD2	chr6	170570295	170589637
PDCD2_chr6_170570295_170589637	0/0	t0020	2321	1	0	1	0	0	0	copy fasta	PDCD2	chr6	170570295	170589637
PDCD4_chr10_110866928_110905006	0/0	t0001	2070	102	10	30	41	9	12	copy fasta	PDCD4	chr10	110866928	110905006
PDCD4_chr10_110866928_110905006	0/0	t0002	2071	83	2	14	62	0	5	copy fasta	PDCD4	chr10	110866928	110905006
PDCD4_chr10_110866928_110905006	0/0	t0003	2072	58	10	3	39	2	4	copy fasta	PDCD4	chr10	110866928	110905006
PDCD4_chr10_110866928_110905006	0/0	t0004	2071	23	13	1	3	0	6	copy fasta	PDCD4	chr10	110866928	110905006
PDCD4_chr10_110866928_110905006	0/0	t0005	2071	19	4	3	10	0	2	copy fasta	PDCD4	chr10	110866928	110905006
PDCD4_chr10_110866928_110905006	0/0	t0006	2068	18	0	0	16	0	2	copy fasta	PDCD4	chr10	110866928	110905006
PDCD4_chr10_110866928_110905006	0/0	t0007	2072	16	3	2	5	0	6	copy fasta	PDCD4	chr10	110866928	110905006
PDCD4_chr10_110866928_110905006	0/0	t0008	2071	12	12	0	0	0	0	copy fasta	PDCD4	chr10	110866928	110905006
PDCD4_chr10_110866928_110905006	0/0	t0009	2071	12	0	5	6	0	1	copy fasta	PDCD4	chr10	110866928	110905006
PDCD4_chr10_110866928_110905006	0/0	t0010	2072	10	4	3	0	0	3	copy fasta	PDCD4	chr10	110866928	110905006
PDCD4_chr10_110866928_110905006	0/0	t0011	2071	9	9	0	0	0	0	copy fasta	PDCD4	chr10	110866928	110905006
PDCD4_chr10_110866928_110905006	0/0	t0012	2068	7	4	2	0	1	0	copy fasta	PDCD4	chr10	110866928	110905006
PDCD4_chr10_110866928_110905006	0/0	t0013	2072	5	0	0	5	0	0	copy fasta	PDCD4	chr10	110866928	110905006
PDCD4_chr10_110866928_110905006	0/0	t0014	2072	5	0	0	5	0	0	copy fasta	PDCD4	chr10	110866928	110905006
PDCD4_chr10_110866928_110905006	0/0	t0015	2073	5	3	1	1	0	0	copy fasta	PDCD4	chr10	110866928	110905006
PDCD4_chr10_110866928_110905006	0/0	t0016	2071	3	3	0	0	0	0	copy fasta	PDCD4	chr10	110866928	110905006
PDCD4_chr10_110866928_110905006	0/0	t0017	2073	3	3	0	0	0	0	copy fasta	PDCD4	chr10	110866928	110905006
PDCD4_chr10_110866928_110905006	0/0	t0018	2071	2	0	1	1	0	0	copy fasta	PDCD4	chr10	110866928	110905006
PDCD4_chr10_110866928_110905006	0/0	t0019	2072	2	0	0	2	0	0	copy fasta	PDCD4	chr10	110866928	110905006
PDCD4_chr10_110866928_110905006	0/0	t0020	2073	2	2	0	0	0	0	copy fasta	PDCD4	chr10	110866928	110905006
PDCD4_chr10_110866928_110905006	0/0	t0021	2072	1	0	0	1	0	0	copy fasta	PDCD4	chr10	110866928	110905006
PDCD4_chr10_110866928_110905006	0/0	t0022	2057	1	1	0	0	0	0	copy fasta	PDCD4	chr10	110866928	110905006
PDCD4_chr10_110866928_110905006	0/0	t0023	2067	1	0	0	1	0	0	copy fasta	PDCD4	chr10	110866928	110905006
PDCD4_chr10_110866928_110905006	0/0	t0024	2071	1	0	0	1	0	0	copy fasta	PDCD4	chr10	110866928	110905006
PDCD4_chr10_110866928_110905006	0/0	t0025	2070	1	0	0	1	0	0	copy fasta	PDCD4	chr10	110866928	110905006
PDCD4_chr10_110866928_110905006	0/0	t0026	2070	1	0	0	1	0	0	copy fasta	PDCD4	chr10	110866928	110905006
PDCD4_chr10_110866928_110905006	0/0	t0027	2069	1	0	1	0	0	0	copy fasta	PDCD4	chr10	110866928	110905006
PDCD4_chr10_110866928_110905006	0/0	t0028	2070	1	1	0	0	0	0	copy fasta	PDCD4	chr10	110866928	110905006
PDCD4_chr10_110866928_110905006	0/0	t0029	2068	1	0	0	1	0	0	copy fasta	PDCD4	chr10	110866928	110905006
PDCD4_chr10_110866928_110905006	0/0	t0030	2067	1	0	0	0	0	1	copy fasta	PDCD4	chr10	110866928	110905006
PDCD4_chr10_110866928_110905006	0/0	t0031	2071	1	0	0	1	0	0	copy fasta	PDCD4	chr10	110866928	110905006
PDCD4_chr10_110866928_110905006	0/0	t0032	2070	1	0	0	0	0	1	copy fasta	PDCD4	chr10	110866928	110905006
PDCD4_chr10_110866928_110905006	0/0	t0033	2072	1	1	0	0	0	0	copy fasta	PDCD4	chr10	110866928	110905006
PDCD4_chr10_110866928_110905006	0/0	t0034	2070	1	0	0	1	0	0	copy fasta	PDCD4	chr10	110866928	110905006
PDCD4_chr10_110866928_110905006	0/0	t0035	2069	1	0	0	1	0	0	copy fasta	PDCD4	chr10	110866928	110905006
PDCD4_chr10_110866928_110905006	0/0	t0036	2094	1	0	0	1	0	0	copy fasta	PDCD4	chr10	110866928	110905006
PDCD4_chr10_110866928_110905006	0/0	t0037	2072	1	1	0	0	0	0	copy fasta	PDCD4	chr10	110866928	110905006
PDCD4_chr10_110866928_110905006	0/0	t0038	2073	1	1	0	0	0	0	copy fasta	PDCD4	chr10	110866928	110905006
PDCD4_chr10_110866928_110905006	0/0	t0039	2072	1	1	0	0	0	0	copy fasta	PDCD4	chr10	110866928	110905006
PDCD4_chr10_110866928_110905006	0/0	t0040	2073	1	0	0	0	0	1	copy fasta	PDCD4	chr10	110866928	110905006
PDCD4_chr10_110866928_110905006	0/0	t0041	2072	1	1	0	0	0	0	copy fasta	PDCD4	chr10	110866928	110905006
PDCD4_chr10_110866928_110905006	0/0	t0042	2071	1	1	0	0	0	0	copy fasta	PDCD4	chr10	110866928	110905006
PDCD5_chr19_32576190_32592453	1/0	t0001	226	374	84	46	201	12	30	copy fasta	PDCD5	chr19	32576190	32592453
PDCD5_chr19_32576190_32592453	0/1	t0002	226	39	7	18	0	4	9	copy fasta	PDCD5	chr19	32576190	32592453
PDCD5_chr19_32576190_32592453	0/0	t0003	226	4	0	3	0	0	1	copy fasta	PDCD5	chr19	32576190	32592453
PDCD5_chr19_32576190_32592453	0/0	t0004	226	3	3	0	0	0	0	copy fasta	PDCD5	chr19	32576190	32592453
PDCD5_chr19_32576190_32592453	0/0	t0005	226	1	0	0	1	0	0	copy fasta	PDCD5	chr19	32576190	32592453
PDCD5_chr19_32576190_32592453	0/0	t0006	226	1	0	1	0	0	0	copy fasta	PDCD5	chr19	32576190	32592453