JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PDCD6IP_chr3_33793630_33874703	1/1	t0001	3278	149	28	29	66	5	19	copy fasta	PDCD6IP	chr3	33793630	33874703
PDCD6IP_chr3_33793630_33874703	0/0	t0002	3283	114	17	22	61	3	11	copy fasta	PDCD6IP	chr3	33793630	33874703
PDCD6IP_chr3_33793630_33874703	0/0	t0003	3278	14	0	0	14	0	0	copy fasta	PDCD6IP	chr3	33793630	33874703
PDCD6IP_chr3_33793630_33874703	0/0	t0004	3278	10	10	0	0	0	0	copy fasta	PDCD6IP	chr3	33793630	33874703
PDCD6IP_chr3_33793630_33874703	0/0	t0005	3283	7	6	1	0	0	0	copy fasta	PDCD6IP	chr3	33793630	33874703
PDCD6IP_chr3_33793630_33874703	0/0	t0006	3283	5	0	2	0	0	3	copy fasta	PDCD6IP	chr3	33793630	33874703
PDCD6IP_chr3_33793630_33874703	0/0	t0007	3283	5	5	0	0	0	0	copy fasta	PDCD6IP	chr3	33793630	33874703
PDCD6IP_chr3_33793630_33874703	0/0	t0008	3278	2	2	0	0	0	0	copy fasta	PDCD6IP	chr3	33793630	33874703
PDCD6IP_chr3_33793630_33874703	0/0	t0009	3283	2	2	0	0	0	0	copy fasta	PDCD6IP	chr3	33793630	33874703
PDCD6IP_chr3_33793630_33874703	0/0	t0010	3283	1	0	1	0	0	0	copy fasta	PDCD6IP	chr3	33793630	33874703
PDCD6IP_chr3_33793630_33874703	0/0	t0011	3283	1	1	0	0	0	0	copy fasta	PDCD6IP	chr3	33793630	33874703
PDCD6IP_chr3_33793630_33874703	0/0	t0012	3278	1	1	0	0	0	0	copy fasta	PDCD6IP	chr3	33793630	33874703
PDCD6IP_chr3_33793630_33874703	0/0	t0013	3278	1	1	0	0	0	0	copy fasta	PDCD6IP	chr3	33793630	33874703
PDCD6IP_chr3_33793630_33874703	0/0	t0014	3278	1	0	1	0	0	0	copy fasta	PDCD6IP	chr3	33793630	33874703
PDCD6IP_chr3_33793630_33874703	0/0	t0015	3283	1	1	0	0	0	0	copy fasta	PDCD6IP	chr3	33793630	33874703
PDCD6IP_chr3_33793630_33874703	0/0	t0016	3283	1	1	0	0	0	0	copy fasta	PDCD6IP	chr3	33793630	33874703
PDCD6IP_chr3_33793630_33874703	0/0	t0017	3283	1	0	0	1	0	0	copy fasta	PDCD6IP	chr3	33793630	33874703
PDCD6IP_chr3_33793630_33874703	0/0	t0018	3283	1	0	0	0	0	1	copy fasta	PDCD6IP	chr3	33793630	33874703
PDCD6IP_chr3_33793630_33874703	0/0	t0019	3278	1	1	0	0	0	0	copy fasta	PDCD6IP	chr3	33793630	33874703
PDCD6_chr5_266646_319974	1/1	t0001	535	304	34	75	143	14	36	copy fasta	PDCD6	chr5	266646	319974
PDCD6_chr5_266646_319974	0/0	t0002	535	24	22	2	0	0	0	copy fasta	PDCD6	chr5	266646	319974
PDCD6_chr5_266646_319974	0/0	t0003	535	15	10	3	1	0	1	copy fasta	PDCD6	chr5	266646	319974
PDCD6_chr5_266646_319974	0/0	t0004	535	7	6	1	0	0	0	copy fasta	PDCD6	chr5	266646	319974
PDCD6_chr5_266646_319974	0/0	t0005	535	6	6	0	0	0	0	copy fasta	PDCD6	chr5	266646	319974
PDCD6_chr5_266646_319974	0/0	t0006	534	3	0	0	2	0	1	copy fasta	PDCD6	chr5	266646	319974
PDCD6_chr5_266646_319974	0/0	t0007	535	1	0	1	0	0	0	copy fasta	PDCD6	chr5	266646	319974
PDCD7_chr15_65112379_65138808	1/1	t0001	1366	201	83	45	43	8	20	copy fasta	PDCD7	chr15	65112379	65138808
PDCD7_chr15_65112379_65138808	0/0	t0002	1366	6	2	0	4	0	0	copy fasta	PDCD7	chr15	65112379	65138808
PDCD7_chr15_65112379_65138808	0/0	t0003	1364	3	0	0	1	0	2	copy fasta	PDCD7	chr15	65112379	65138808
PDCD7_chr15_65112379_65138808	0/0	t0004	1366	2	2	0	0	0	0	copy fasta	PDCD7	chr15	65112379	65138808
PDCD7_chr15_65112379_65138808	0/0	t0005	1366	1	0	0	1	0	0	copy fasta	PDCD7	chr15	65112379	65138808
PDCD7_chr15_65112379_65138808	0/0	t0006	1366	1	0	0	1	0	0	copy fasta	PDCD7	chr15	65112379	65138808
PDCD7_chr15_65112379_65138808	0/0	t0007	1366	1	1	0	0	0	0	copy fasta	PDCD7	chr15	65112379	65138808
PDCD7_chr15_65112379_65138808	0/0	t0008	1366	1	0	0	1	0	0	copy fasta	PDCD7	chr15	65112379	65138808
PDCD7_chr15_65112379_65138808	0/0	t0009	1366	1	0	0	1	0	0	copy fasta	PDCD7	chr15	65112379	65138808
PDCD7_chr15_65112379_65138808	0/0	t0010	1366	1	0	1	0	0	0	copy fasta	PDCD7	chr15	65112379	65138808
PDCL2_chr4_55551519_55597245	1/1	t0001	175	287	82	49	127	5	22	copy fasta	PDCL2	chr4	55551519	55597245
PDCL2_chr4_55551519_55597245	0/0	t0002	175	69	3	11	39	9	7	copy fasta	PDCL2	chr4	55551519	55597245
PDCL2_chr4_55551519_55597245	0/0	t0003	175	18	11	1	0	0	6	copy fasta	PDCL2	chr4	55551519	55597245
PDCL2_chr4_55551519_55597245	0/0	t0004	175	2	0	1	0	0	1	copy fasta	PDCL2	chr4	55551519	55597245
PDCL3_chr2_100557993_100581739	0/1	t0001	318	372	89	59	163	14	46	copy fasta	PDCL3	chr2	100557993	100581739
PDCL3_chr2_100557993_100581739	1/0	t0002	319	22	5	11	0	4	1	copy fasta	PDCL3	chr2	100557993	100581739
PDCL3_chr2_100557993_100581739	0/0	t0003	318	1	0	0	1	0	0	copy fasta	PDCL3	chr2	100557993	100581739
PDCL3_chr2_100557993_100581739	0/0	t0004	319	1	0	0	0	0	1	copy fasta	PDCL3	chr2	100557993	100581739
PDCL_chr9_122813097_122833588	0/0	t0001	2112	171	40	22	93	4	12	copy fasta	PDCL	chr9	122813097	122833588
PDCL_chr9_122813097_122833588	1/1	t0002	2112	131	28	38	30	7	26	copy fasta	PDCL	chr9	122813097	122833588
PDCL_chr9_122813097_122833588	0/0	t0003	2112	55	5	2	43	1	4	copy fasta	PDCL	chr9	122813097	122833588
PDCL_chr9_122813097_122833588	0/0	t0004	2111	17	0	1	15	0	1	copy fasta	PDCL	chr9	122813097	122833588
PDCL_chr9_122813097_122833588	0/0	t0005	2112	12	10	2	0	0	0	copy fasta	PDCL	chr9	122813097	122833588
PDCL_chr9_122813097_122833588	0/0	t0006	2112	8	0	1	7	0	0	copy fasta	PDCL	chr9	122813097	122833588