JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PDCL_chr9_122813097_122833588	0/0	t0007	2112	7	6	1	0	0	0	copy fasta	PDCL	chr9	122813097	122833588
PDCL_chr9_122813097_122833588	0/0	t0008	2112	4	4	0	0	0	0	copy fasta	PDCL	chr9	122813097	122833588
PDCL_chr9_122813097_122833588	0/0	t0009	2113	3	1	0	2	0	0	copy fasta	PDCL	chr9	122813097	122833588
PDCL_chr9_122813097_122833588	0/0	t0010	2113	3	2	1	0	0	0	copy fasta	PDCL	chr9	122813097	122833588
PDCL_chr9_122813097_122833588	0/0	t0011	2111	3	0	0	1	0	2	copy fasta	PDCL	chr9	122813097	122833588
PDCL_chr9_122813097_122833588	0/0	t0012	2112	2	0	0	2	0	0	copy fasta	PDCL	chr9	122813097	122833588
PDCL_chr9_122813097_122833588	0/0	t0013	2112	1	0	1	0	0	0	copy fasta	PDCL	chr9	122813097	122833588
PDCL_chr9_122813097_122833588	0/0	t0014	2111	1	1	0	0	0	0	copy fasta	PDCL	chr9	122813097	122833588
PDCL_chr9_122813097_122833588	0/0	t0015	2112	1	0	1	0	0	0	copy fasta	PDCL	chr9	122813097	122833588
PDCL_chr9_122813097_122833588	0/0	t0016	2112	1	0	0	0	0	1	copy fasta	PDCL	chr9	122813097	122833588
PDCL_chr9_122813097_122833588	0/0	t0017	2111	1	1	0	0	0	0	copy fasta	PDCL	chr9	122813097	122833588
PDCL_chr9_122813097_122833588	0/0	t0018	2112	1	0	0	1	0	0	copy fasta	PDCL	chr9	122813097	122833588
PDC_chr1_186438566_186466114	1/1	t0001	494	328	42	57	182	14	31	copy fasta	PDC	chr1	186438566	186466114
PDC_chr1_186438566_186466114	0/0	t0002	494	43	17	15	8	0	3	copy fasta	PDC	chr1	186438566	186466114
PDC_chr1_186438566_186466114	0/0	t0003	494	17	17	0	0	0	0	copy fasta	PDC	chr1	186438566	186466114
PDC_chr1_186438566_186466114	0/0	t0004	494	11	11	0	0	0	0	copy fasta	PDC	chr1	186438566	186466114
PDC_chr1_186438566_186466114	0/0	t0005	494	2	2	0	0	0	0	copy fasta	PDC	chr1	186438566	186466114
PDC_chr1_186438566_186466114	0/0	t0006	494	1	1	0	0	0	0	copy fasta	PDC	chr1	186438566	186466114
PDC_chr1_186438566_186466114	0/0	t0007	494	1	1	0	0	0	0	copy fasta	PDC	chr1	186438566	186466114
PDC_chr1_186438566_186466114	0/0	t0008	494	1	1	0	0	0	0	copy fasta	PDC	chr1	186438566	186466114
PDE10A_chr6_165322289_165668241	1/1	t0001	6167	79	17	25	26	2	7	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	t0002	6167	36	20	8	4	1	3	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	t0003	6167	35	9	7	10	1	8	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	t0004	6168	12	7	5	0	0	0	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	t0005	6167	10	10	0	0	0	0	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	t0006	6167	8	2	2	0	1	3	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	t0007	6167	4	0	0	4	0	0	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	t0008	6167	3	3	0	0	0	0	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	t0009	6167	3	3	0	0	0	0	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	t0010	6167	2	0	0	0	1	1	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	t0011	6167	2	0	0	2	0	0	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	t0012	6163	2	0	2	0	0	0	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	t0013	6167	2	0	1	0	0	1	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	t0014	6167	1	0	1	0	0	0	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	t0015	6167	1	1	0	0	0	0	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	t0016	6167	1	1	0	0	0	0	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	t0017	6167	1	1	0	0	0	0	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	t0018	6167	1	1	0	0	0	0	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	t0019	6167	1	0	0	0	0	1	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	t0020	6167	1	0	0	0	0	1	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	t0021	6167	1	0	0	0	0	1	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	t0022	6167	1	1	0	0	0	0	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	t0023	6167	1	0	1	0	0	0	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	t0024	6167	1	0	0	0	0	1	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	t0025	6167	1	1	0	0	0	0	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	t0026	6167	1	0	0	0	0	1	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	t0027	6167	1	1	0	0	0	0	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	t0028	6167	1	1	0	0	0	0	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	t0029	6167	1	0	1	0	0	0	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	t0030	6167	1	1	0	0	0	0	copy fasta	PDE10A	chr6	165322289	165668241