JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PDE10A_chr6_165322289_165668241	0/0	t0031	6167	1	0	1	0	0	0	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	t0032	6167	1	1	0	0	0	0	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	t0033	6167	1	1	0	0	0	0	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	t0034	6167	1	1	0	0	0	0	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	t0035	6167	1	1	0	0	0	0	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	t0036	6167	1	1	0	0	0	0	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	t0037	6167	1	1	0	0	0	0	copy fasta	PDE10A	chr6	165322289	165668241
PDE11A_chr2_177618244_178077777	0/1	t0001	6497	37	6	9	12	3	6	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0002	6500	9	5	0	3	0	1	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0003	6489	8	0	0	6	0	2	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0004	6498	6	0	2	3	0	1	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0005	6500	6	6	0	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0006	6498	5	5	0	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0007	6499	5	0	2	0	0	3	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0008	6501	5	4	1	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0009	6500	4	3	0	0	0	1	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0010	6502	4	3	1	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0011	6489	3	0	0	3	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0012	6496	3	2	0	1	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0013	6506	3	2	1	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0014	6499	3	3	0	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0015	6501	3	0	2	0	0	1	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0016	6500	3	3	0	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0017	6499	3	3	0	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0018	6490	2	0	1	0	1	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0019	6495	2	0	2	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0020	6489	2	0	0	2	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0021	6503	2	2	0	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0022	6502	2	0	1	0	0	1	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0023	6500	2	2	0	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0024	6501	2	1	1	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0025	6500	2	2	0	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0026	6503	2	2	0	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0027	6500	1	1	0	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0028	6499	1	0	0	1	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0029	6489	1	0	0	1	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0030	6497	1	0	0	1	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0031	6490	1	0	0	1	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0032	6497	1	0	0	1	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0033	6490	1	0	0	0	0	1	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0034	6497	1	0	0	1	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0035	6501	1	0	0	0	0	1	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0036	6497	1	0	0	1	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0037	6499	1	0	1	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0038	6498	1	0	1	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0039	6497	1	0	1	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0040	6497	1	0	0	1	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0041	6497	1	0	0	0	0	1	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0042	6497	1	0	0	1	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0043	6497	1	0	0	0	0	1	copy fasta	PDE11A	chr2	177618244	178077777