JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PDE11A_chr2_177618244_178077777	0/0	t0044	6497	1	0	1	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0045	6502	1	1	0	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0046	6506	1	1	0	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0047	6504	1	1	0	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0048	6503	1	1	0	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0049	6498	1	1	0	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0050	6505	1	1	0	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0051	6503	1	1	0	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0052	6502	1	1	0	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0053	6501	1	1	0	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0054	6500	1	1	0	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0055	6500	1	0	1	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0056	6504	1	1	0	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	1/0	t0057	6504	1	0	0	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0058	6502	1	1	0	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0059	6504	1	1	0	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0060	6501	1	1	0	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0061	6501	1	0	0	1	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0062	6501	1	1	0	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0063	6501	1	1	0	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0064	6501	1	1	0	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0065	6499	1	1	0	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0066	6499	1	1	0	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0067	6500	1	1	0	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	t0068	6491	1	1	0	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE12_chr3_57551274_57571848	0/0	t0001	6949	111	11	26	57	6	11	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	1/0	t0002	6951	70	1	9	54	3	2	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0003	6951	36	9	4	13	0	10	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0004	6951	21	6	10	0	1	4	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0005	6951	15	15	0	0	0	0	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0006	6950	12	0	2	7	2	1	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0007	6951	12	11	1	0	0	0	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/1	t0008	6951	8	0	6	0	1	0	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0009	6952	7	1	1	3	0	2	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0010	6951	7	6	1	0	0	0	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0011	6943	6	6	0	0	0	0	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0012	6949	5	0	0	5	0	0	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0013	6949	4	0	4	0	0	0	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0014	6950	4	3	1	0	0	0	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0015	6951	3	0	0	3	0	0	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0016	6951	3	0	0	3	0	0	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0017	6944	3	3	0	0	0	0	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0018	6951	3	0	1	0	0	2	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0019	6951	3	0	0	3	0	0	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0020	6951	2	1	1	0	0	0	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0021	6950	2	0	0	2	0	0	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0022	6951	2	0	0	2	0	0	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0023	6951	2	0	0	2	0	0	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0024	6951	2	0	0	2	0	0	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0025	6951	2	2	0	0	0	0	copy fasta	PDE12	chr3	57551274	57571848