Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATAD3B_chr1_1466765_1502848	0/0	t0009	2152	4	3	0	1	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	t0010	2152	3	0	1	0	2	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	t0011	2152	3	2	0	1	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	t0012	2149	3	3	0	0	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	t0013	2152	2	0	0	1	1	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	t0014	2152	2	0	0	2	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	t0015	2150	2	1	0	0	0	1	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	t0016	2150	2	2	0	0	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	t0017	2152	2	0	0	2	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	t0018	2152	2	2	0	0	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	t0019	2150	1	1	0	0	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	t0020	2152	1	0	0	1	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	t0021	2151	1	0	0	1	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	t0022	2152	1	0	1	0	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	t0023	2152	1	1	0	0	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	t0024	2150	1	1	0	0	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	t0025	2150	1	0	0	1	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	t0026	2160	1	1	0	0	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	t0027	2150	1	0	1	0	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	t0028	2150	1	0	1	0	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	t0029	2150	1	0	0	1	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	t0030	1898	1	1	0	0	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	t0031	2152	1	1	0	0	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	t0032	2152	1	1	0	0	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	t0033	2193	1	0	0	1	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	t0034	2204	1	0	0	1	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	t0035	2152	1	0	0	1	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	t0036	2152	1	0	0	0	0	1	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	t0037	2152	1	0	0	0	0	1	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	t0038	2152	1	1	0	0	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	t0039	2151	1	0	0	1	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	t0040	2153	1	0	0	0	0	1	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	t0041	2151	1	1	0	0	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	t0042	2152	1	1	0	0	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	t0043	2152	1	0	0	1	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3C_chr1_1444689_1475163	0/0	t0001	2623	40	8	0	27	0	5	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0002	2628	17	1	9	0	2	5	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0003	2624	17	1	0	13	0	3	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	1/0	t0004	2629	13	1	5	0	1	5	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/1	t0005	2627	11	0	3	0	6	1	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0006	2627	11	0	7	4	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0007	2626	11	0	5	4	0	2	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0008	2626	10	0	1	7	1	1	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0009	2627	6	4	0	2	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0010	2631	6	0	0	6	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0011	2630	5	1	1	0	0	3	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0012	2625	5	0	0	4	0	1	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0013	2624	5	0	3	2	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0014	2636	5	0	1	4	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0015	2631	4	1	1	0	1	1	copy fasta	ATAD3C	chr1	1444689	1475163