JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PDE12_chr3_57551274_57571848	0/0	t0026	6951	2	2	0	0	0	0	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0027	6951	2	0	0	2	0	0	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0028	6951	2	2	0	0	0	0	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0029	6949	1	0	0	0	0	1	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0030	6949	1	0	0	0	0	1	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0031	6949	1	0	1	0	0	0	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0032	6949	1	0	0	0	0	1	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0033	6950	1	0	0	1	0	0	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0034	6949	1	1	0	0	0	0	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0035	6949	1	0	1	0	0	0	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0036	6950	1	0	1	0	0	0	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0037	6950	1	0	0	1	0	0	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0038	6951	1	0	1	0	0	0	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0039	6953	1	0	0	1	0	0	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0040	6951	1	0	0	1	0	0	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0041	6951	1	1	0	0	0	0	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0042	6951	1	1	0	0	0	0	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0043	6950	1	1	0	0	0	0	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0044	6950	1	0	1	0	0	0	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0045	6951	1	0	0	1	0	0	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0046	6944	1	1	0	0	0	0	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0047	6944	1	1	0	0	0	0	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0048	6943	1	1	0	0	0	0	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0049	6951	1	0	0	0	0	1	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0050	6951	1	0	1	0	0	0	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0051	6951	1	0	1	0	0	0	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0052	6951	1	1	0	0	0	0	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0053	6953	1	1	0	0	0	0	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0054	6951	1	1	0	0	0	0	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0055	6952	1	1	0	0	0	0	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0056	6952	1	1	0	0	0	0	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0057	6951	1	0	0	0	0	1	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0058	6951	1	1	0	0	0	0	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0059	6951	1	1	0	0	0	0	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0060	6951	1	1	0	0	0	0	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0061	6952	1	1	0	0	0	0	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0062	6951	1	1	0	0	0	0	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0063	6951	1	0	0	0	0	1	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0064	6952	1	0	0	0	1	0	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	t0065	6952	1	0	0	1	0	0	copy fasta	PDE12	chr3	57551274	57571848
PDE1A_chr2_182135041_182432036	0/0	t0001	3454	38	1	11	18	5	3	copy fasta	PDE1A	chr2	182135041	182432036
PDE1A_chr2_182135041_182432036	1/0	t0002	3448	36	6	7	16	0	6	copy fasta	PDE1A	chr2	182135041	182432036
PDE1A_chr2_182135041_182432036	0/0	t0003	3458	23	4	2	15	0	2	copy fasta	PDE1A	chr2	182135041	182432036
PDE1A_chr2_182135041_182432036	0/1	t0004	3462	15	1	2	7	1	3	copy fasta	PDE1A	chr2	182135041	182432036
PDE1A_chr2_182135041_182432036	0/0	t0005	3454	14	0	0	13	1	0	copy fasta	PDE1A	chr2	182135041	182432036
PDE1A_chr2_182135041_182432036	0/0	t0006	3456	13	7	0	5	1	0	copy fasta	PDE1A	chr2	182135041	182432036
PDE1A_chr2_182135041_182432036	0/0	t0007	3452	12	3	3	1	1	4	copy fasta	PDE1A	chr2	182135041	182432036
PDE1A_chr2_182135041_182432036	0/0	t0008	3460	8	6	0	1	0	1	copy fasta	PDE1A	chr2	182135041	182432036
PDE1A_chr2_182135041_182432036	0/0	t0009	3458	8	4	0	4	0	0	copy fasta	PDE1A	chr2	182135041	182432036
PDE1A_chr2_182135041_182432036	0/0	t0010	3450	7	1	3	0	1	2	copy fasta	PDE1A	chr2	182135041	182432036