JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PDE1A_chr2_182135041_182432036	0/0	t0011	3452	7	7	0	0	0	0	copy fasta	PDE1A	chr2	182135041	182432036
PDE1A_chr2_182135041_182432036	0/0	t0012	3464	5	0	4	1	0	0	copy fasta	PDE1A	chr2	182135041	182432036
PDE1A_chr2_182135041_182432036	0/0	t0013	3464	5	2	1	1	0	1	copy fasta	PDE1A	chr2	182135041	182432036
PDE1A_chr2_182135041_182432036	0/0	t0014	3460	5	1	1	3	0	0	copy fasta	PDE1A	chr2	182135041	182432036
PDE1A_chr2_182135041_182432036	0/0	t0015	3459	5	4	1	0	0	0	copy fasta	PDE1A	chr2	182135041	182432036
PDE1A_chr2_182135041_182432036	0/0	t0016	3466	4	0	3	1	0	0	copy fasta	PDE1A	chr2	182135041	182432036
PDE1A_chr2_182135041_182432036	0/0	t0017	3466	4	0	0	3	0	1	copy fasta	PDE1A	chr2	182135041	182432036
PDE1A_chr2_182135041_182432036	0/0	t0018	3462	4	0	0	4	0	0	copy fasta	PDE1A	chr2	182135041	182432036
PDE1A_chr2_182135041_182432036	0/0	t0019	3455	4	4	0	0	0	0	copy fasta	PDE1A	chr2	182135041	182432036
PDE1A_chr2_182135041_182432036	0/0	t0020	3454	4	0	2	0	1	1	copy fasta	PDE1A	chr2	182135041	182432036
PDE1A_chr2_182135041_182432036	0/0	t0021	3454	4	0	0	3	0	1	copy fasta	PDE1A	chr2	182135041	182432036
PDE1A_chr2_182135041_182432036	0/0	t0022	3457	3	3	0	0	0	0	copy fasta	PDE1A	chr2	182135041	182432036
PDE1A_chr2_182135041_182432036	0/0	t0023	3456	3	3	0	0	0	0	copy fasta	PDE1A	chr2	182135041	182432036
PDE1A_chr2_182135041_182432036	0/0	t0024	3454	3	3	0	0	0	0	copy fasta	PDE1A	chr2	182135041	182432036
PDE1A_chr2_182135041_182432036	0/0	t0025	3457	2	2	0	0	0	0	copy fasta	PDE1A	chr2	182135041	182432036
PDE1A_chr2_182135041_182432036	0/0	t0026	3460	2	1	0	1	0	0	copy fasta	PDE1A	chr2	182135041	182432036
PDE1A_chr2_182135041_182432036	0/0	t0027	3458	2	0	0	1	0	1	copy fasta	PDE1A	chr2	182135041	182432036
PDE1A_chr2_182135041_182432036	0/0	t0028	3456	2	0	0	2	0	0	copy fasta	PDE1A	chr2	182135041	182432036
PDE1A_chr2_182135041_182432036	0/0	t0029	3460	1	1	0	0	0	0	copy fasta	PDE1A	chr2	182135041	182432036
PDE1A_chr2_182135041_182432036	0/0	t0030	3453	1	1	0	0	0	0	copy fasta	PDE1A	chr2	182135041	182432036
PDE1A_chr2_182135041_182432036	0/0	t0031	3468	1	0	1	0	0	0	copy fasta	PDE1A	chr2	182135041	182432036
PDE1A_chr2_182135041_182432036	0/0	t0032	3465	1	1	0	0	0	0	copy fasta	PDE1A	chr2	182135041	182432036
PDE1A_chr2_182135041_182432036	0/0	t0033	3461	1	1	0	0	0	0	copy fasta	PDE1A	chr2	182135041	182432036
PDE1A_chr2_182135041_182432036	0/0	t0034	3462	1	0	0	1	0	0	copy fasta	PDE1A	chr2	182135041	182432036
PDE1A_chr2_182135041_182432036	0/0	t0035	3456	1	0	0	1	0	0	copy fasta	PDE1A	chr2	182135041	182432036
PDE1A_chr2_182135041_182432036	0/0	t0036	3454	1	0	1	0	0	0	copy fasta	PDE1A	chr2	182135041	182432036
PDE1A_chr2_182135041_182432036	0/0	t0037	3454	1	0	0	1	0	0	copy fasta	PDE1A	chr2	182135041	182432036
PDE1A_chr2_182135041_182432036	0/0	t0038	3452	1	0	0	1	0	0	copy fasta	PDE1A	chr2	182135041	182432036
PDE1A_chr2_182135041_182432036	0/0	t0039	3458	1	1	0	0	0	0	copy fasta	PDE1A	chr2	182135041	182432036
PDE1A_chr2_182135041_182432036	0/0	t0040	3455	1	1	0	0	0	0	copy fasta	PDE1A	chr2	182135041	182432036
PDE1A_chr2_182135041_182432036	0/0	t0041	3450	1	0	0	0	1	0	copy fasta	PDE1A	chr2	182135041	182432036
PDE1A_chr2_182135041_182432036	0/0	t0042	3461	1	0	0	0	0	1	copy fasta	PDE1A	chr2	182135041	182432036
PDE1A_chr2_182135041_182432036	0/0	t0043	3457	1	0	1	0	0	0	copy fasta	PDE1A	chr2	182135041	182432036
PDE1A_chr2_182135041_182432036	0/0	t0044	3452	1	0	1	0	0	0	copy fasta	PDE1A	chr2	182135041	182432036
PDE1A_chr2_182135041_182432036	0/0	t0045	3456	1	1	0	0	0	0	copy fasta	PDE1A	chr2	182135041	182432036
PDE1A_chr2_182135041_182432036	0/0	t0046	3455	1	0	0	0	1	0	copy fasta	PDE1A	chr2	182135041	182432036
PDE1A_chr2_182135041_182432036	0/0	t0047	3449	1	0	0	0	1	0	copy fasta	PDE1A	chr2	182135041	182432036
PDE1A_chr2_182135041_182432036	0/0	t0048	3450	1	1	0	0	0	0	copy fasta	PDE1A	chr2	182135041	182432036
PDE1A_chr2_182135041_182432036	0/0	t0049	3450	1	1	0	0	0	0	copy fasta	PDE1A	chr2	182135041	182432036
PDE1A_chr2_182135041_182432036	0/0	t0050	3448	1	0	0	0	0	1	copy fasta	PDE1A	chr2	182135041	182432036
PDE1B_chr12_54544601_54584239	0/1	t0001	1583	147	7	36	75	3	25	copy fasta	PDE1B	chr12	54544601	54584239
PDE1B_chr12_54544601_54584239	1/0	t0002	1583	101	39	14	41	0	6	copy fasta	PDE1B	chr12	54544601	54584239
PDE1B_chr12_54544601_54584239	0/0	t0003	1583	70	4	18	34	8	6	copy fasta	PDE1B	chr12	54544601	54584239
PDE1B_chr12_54544601_54584239	0/0	t0004	1583	38	23	3	4	5	3	copy fasta	PDE1B	chr12	54544601	54584239
PDE1B_chr12_54544601_54584239	0/0	t0005	1583	21	0	0	21	0	0	copy fasta	PDE1B	chr12	54544601	54584239
PDE1B_chr12_54544601_54584239	0/0	t0006	1583	12	12	0	0	0	0	copy fasta	PDE1B	chr12	54544601	54584239
PDE1B_chr12_54544601_54584239	0/0	t0007	1583	9	9	0	0	0	0	copy fasta	PDE1B	chr12	54544601	54584239
PDE1B_chr12_54544601_54584239	0/0	t0008	1583	9	0	0	9	0	0	copy fasta	PDE1B	chr12	54544601	54584239
PDE1B_chr12_54544601_54584239	0/0	t0009	1583	3	3	0	0	0	0	copy fasta	PDE1B	chr12	54544601	54584239
PDE1B_chr12_54544601_54584239	0/0	t0010	1583	2	0	2	0	0	0	copy fasta	PDE1B	chr12	54544601	54584239