JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PDE1B_chr12_54544601_54584239	0/0	t0011	1583	2	0	0	1	0	1	copy fasta	PDE1B	chr12	54544601	54584239
PDE1B_chr12_54544601_54584239	0/0	t0012	1583	2	0	1	0	0	1	copy fasta	PDE1B	chr12	54544601	54584239
PDE1B_chr12_54544601_54584239	0/0	t0013	1583	2	1	0	1	0	0	copy fasta	PDE1B	chr12	54544601	54584239
PDE1B_chr12_54544601_54584239	0/0	t0014	1583	2	0	2	0	0	0	copy fasta	PDE1B	chr12	54544601	54584239
PDE1B_chr12_54544601_54584239	0/0	t0015	1583	1	0	0	1	0	0	copy fasta	PDE1B	chr12	54544601	54584239
PDE1B_chr12_54544601_54584239	0/0	t0016	1583	1	1	0	0	0	0	copy fasta	PDE1B	chr12	54544601	54584239
PDE1B_chr12_54544601_54584239	0/0	t0017	1583	1	1	0	0	0	0	copy fasta	PDE1B	chr12	54544601	54584239
PDE1B_chr12_54544601_54584239	0/0	t0018	1583	1	0	1	0	0	0	copy fasta	PDE1B	chr12	54544601	54584239
PDE1B_chr12_54544601_54584239	0/0	t0019	1583	1	0	0	0	0	1	copy fasta	PDE1B	chr12	54544601	54584239
PDE1B_chr12_54544601_54584239	0/0	t0020	1583	1	0	0	0	0	1	copy fasta	PDE1B	chr12	54544601	54584239
PDE1B_chr12_54544601_54584239	0/0	t0021	1583	1	0	1	0	0	0	copy fasta	PDE1B	chr12	54544601	54584239
PDE1B_chr12_54544601_54584239	0/0	t0022	1583	1	0	0	1	0	0	copy fasta	PDE1B	chr12	54544601	54584239
PDE1B_chr12_54544601_54584239	0/0	t0023	1583	1	0	0	1	0	0	copy fasta	PDE1B	chr12	54544601	54584239
PDE1B_chr12_54544601_54584239	0/0	t0024	1583	1	0	0	1	0	0	copy fasta	PDE1B	chr12	54544601	54584239
PDE1C_chr7_31746179_32075407	0/0	t0001	2220	112	18	32	42	4	16	copy fasta	PDE1C	chr7	31746179	32075407
PDE1C_chr7_31746179_32075407	0/1	t0002	2220	74	13	10	34	2	14	copy fasta	PDE1C	chr7	31746179	32075407
PDE1C_chr7_31746179_32075407	1/0	t0003	2220	30	27	2	0	0	0	copy fasta	PDE1C	chr7	31746179	32075407
PDE1C_chr7_31746179_32075407	0/0	t0004	2220	18	18	0	0	0	0	copy fasta	PDE1C	chr7	31746179	32075407
PDE1C_chr7_31746179_32075407	0/0	t0005	2221	8	5	0	3	0	0	copy fasta	PDE1C	chr7	31746179	32075407
PDE1C_chr7_31746179_32075407	0/0	t0006	2220	7	5	2	0	0	0	copy fasta	PDE1C	chr7	31746179	32075407
PDE1C_chr7_31746179_32075407	0/0	t0007	2220	3	3	0	0	0	0	copy fasta	PDE1C	chr7	31746179	32075407
PDE1C_chr7_31746179_32075407	0/0	t0008	2218	2	0	2	0	0	0	copy fasta	PDE1C	chr7	31746179	32075407
PDE1C_chr7_31746179_32075407	0/0	t0009	2220	2	2	0	0	0	0	copy fasta	PDE1C	chr7	31746179	32075407
PDE1C_chr7_31746179_32075407	0/0	t0010	2220	1	1	0	0	0	0	copy fasta	PDE1C	chr7	31746179	32075407
PDE1C_chr7_31746179_32075407	0/0	t0011	2220	1	1	0	0	0	0	copy fasta	PDE1C	chr7	31746179	32075407
PDE1C_chr7_31746179_32075407	0/0	t0012	2220	1	1	0	0	0	0	copy fasta	PDE1C	chr7	31746179	32075407
PDE1C_chr7_31746179_32075407	0/0	t0013	2220	1	0	0	1	0	0	copy fasta	PDE1C	chr7	31746179	32075407
PDE1C_chr7_31746179_32075407	0/0	t0014	2220	1	1	0	0	0	0	copy fasta	PDE1C	chr7	31746179	32075407
PDE1C_chr7_31746179_32075407	0/0	t0015	2220	1	1	0	0	0	0	copy fasta	PDE1C	chr7	31746179	32075407
PDE2A_chr11_72571141_72679422	0/1	t0001	1459	254	60	57	98	10	28	copy fasta	PDE2A	chr11	72571141	72679422
PDE2A_chr11_72571141_72679422	0/0	t0002	1459	7	6	1	0	0	0	copy fasta	PDE2A	chr11	72571141	72679422
PDE2A_chr11_72571141_72679422	0/0	t0003	1459	6	6	0	0	0	0	copy fasta	PDE2A	chr11	72571141	72679422
PDE2A_chr11_72571141_72679422	0/0	t0004	1459	5	5	0	0	0	0	copy fasta	PDE2A	chr11	72571141	72679422
PDE2A_chr11_72571141_72679422	0/0	t0005	1459	4	4	0	0	0	0	copy fasta	PDE2A	chr11	72571141	72679422
PDE2A_chr11_72571141_72679422	0/0	t0006	1459	4	3	1	0	0	0	copy fasta	PDE2A	chr11	72571141	72679422
PDE2A_chr11_72571141_72679422	0/0	t0007	1459	1	0	1	0	0	0	copy fasta	PDE2A	chr11	72571141	72679422
PDE2A_chr11_72571141_72679422	0/0	t0008	1459	1	1	0	0	0	0	copy fasta	PDE2A	chr11	72571141	72679422
PDE2A_chr11_72571141_72679422	0/0	t0009	1459	1	1	0	0	0	0	copy fasta	PDE2A	chr11	72571141	72679422
PDE2A_chr11_72571141_72679422	0/0	t0010	1459	1	1	0	0	0	0	copy fasta	PDE2A	chr11	72571141	72679422
PDE2A_chr11_72571141_72679422	0/0	t0011	1459	1	1	0	0	0	0	copy fasta	PDE2A	chr11	72571141	72679422
PDE2A_chr11_72571141_72679422	0/0	t0012	1459	1	0	0	0	0	1	copy fasta	PDE2A	chr11	72571141	72679422
PDE2A_chr11_72571141_72679422	0/0	t0013	1459	1	0	0	1	0	0	copy fasta	PDE2A	chr11	72571141	72679422
PDE2A_chr11_72571141_72679422	0/0	t0014	1459	1	0	0	1	0	0	copy fasta	PDE2A	chr11	72571141	72679422
PDE2A_chr11_72571141_72679422	0/0	t0015	1459	1	1	0	0	0	0	copy fasta	PDE2A	chr11	72571141	72679422
PDE2A_chr11_72571141_72679422	0/0	t0016	1459	1	0	0	0	0	1	copy fasta	PDE2A	chr11	72571141	72679422
PDE2A_chr11_72571141_72679422	0/0	t0017	1459	1	1	0	0	0	0	copy fasta	PDE2A	chr11	72571141	72679422
PDE2A_chr11_72571141_72679422	1/0	t0018	1459	1	0	0	0	0	0	copy fasta	PDE2A	chr11	72571141	72679422
PDE3A_chr12_20363537_20693583	0/0	t0001	9058	9	2	6	0	1	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0002	9061	7	0	1	5	0	1	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0003	9054	6	0	2	3	1	0	copy fasta	PDE3A	chr12	20363537	20693583