JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PDE3A_chr12_20363537_20693583	0/0	t0054	9065	1	0	1	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0055	9067	1	0	0	1	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0056	9071	1	0	0	1	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0057	9077	1	0	0	1	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0058	9056	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0059	9054	1	0	0	1	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0060	9054	1	0	0	0	0	1	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0061	9061	1	0	0	0	0	1	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0062	9058	1	0	1	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0063	9058	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0064	9064	1	0	1	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0065	9064	1	0	1	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0066	9065	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0067	9061	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0068	9062	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0069	9061	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0070	9062	1	0	0	1	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0071	9079	1	0	1	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0072	9066	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0073	9058	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0074	9066	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0075	9063	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0076	9068	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0077	9054	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0078	9084	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0079	9056	1	0	0	1	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0080	9062	1	0	1	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0081	9061	1	0	0	1	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0082	9082	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0083	9061	1	0	0	0	1	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	1/0	t0084	9061	1	0	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0085	9064	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0086	9063	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0087	9066	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0088	9065	1	0	0	1	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0089	9064	1	0	0	1	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0090	9065	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0091	9074	1	0	0	1	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0092	9076	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0093	9058	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0094	9058	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0095	9081	1	0	1	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0096	9059	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0097	9062	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0098	9070	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0099	9056	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0100	9058	1	0	0	0	0	1	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0101	9062	1	0	0	0	1	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0102	9066	1	0	0	0	0	1	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0103	9067	1	0	0	0	0	1	copy fasta	PDE3A	chr12	20363537	20693583