JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PDE3A_chr12_20363537_20693583	0/0	t0104	9063	1	0	0	0	0	1	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0105	9062	1	0	0	0	0	1	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0106	9063	1	0	0	0	0	1	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0107	9063	1	0	0	0	0	1	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0108	9066	1	0	0	0	0	1	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0109	9055	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0110	9043	1	0	0	1	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0111	9052	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0112	9050	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0113	9050	1	0	0	0	1	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0114	9054	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0115	9049	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0116	9072	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0117	9054	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0118	9053	1	0	1	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0119	9056	1	0	1	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0120	9056	1	0	1	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0121	9073	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0122	9074	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0123	9057	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0124	9056	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0125	9054	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0126	9057	1	0	0	1	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0127	9063	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0128	9059	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0129	9060	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0130	9059	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0131	9056	1	0	0	0	1	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0132	9055	1	0	0	1	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0133	9060	1	0	1	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0134	9057	1	0	1	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0135	9076	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0136	9060	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0137	9064	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0138	9066	1	0	1	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0139	9066	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0140	9064	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0141	9074	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0142	9055	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0143	9058	1	0	0	1	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0144	9054	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0145	9059	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0146	9059	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0147	9063	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0148	9058	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	t0149	9061	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3B_chr11_14638804_14877044	0/1	t0001	2657	246	52	41	119	6	27	copy fasta	PDE3B	chr11	14638804	14877044
PDE3B_chr11_14638804_14877044	0/0	t0002	2661	64	22	7	31	2	2	copy fasta	PDE3B	chr11	14638804	14877044
PDE3B_chr11_14638804_14877044	0/0	t0003	2657	4	0	0	4	0	0	copy fasta	PDE3B	chr11	14638804	14877044
PDE3B_chr11_14638804_14877044	0/0	t0004	2661	4	3	1	0	0	0	copy fasta	PDE3B	chr11	14638804	14877044