JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PDE3B_chr11_14638804_14877044	0/0	t0005	2661	3	3	0	0	0	0	copy fasta	PDE3B	chr11	14638804	14877044
PDE3B_chr11_14638804_14877044	0/0	t0006	2661	2	2	0	0	0	0	copy fasta	PDE3B	chr11	14638804	14877044
PDE3B_chr11_14638804_14877044	0/0	t0007	2657	1	1	0	0	0	0	copy fasta	PDE3B	chr11	14638804	14877044
PDE3B_chr11_14638804_14877044	0/0	t0008	2657	1	0	0	0	0	1	copy fasta	PDE3B	chr11	14638804	14877044
PDE3B_chr11_14638804_14877044	0/0	t0009	2657	1	0	0	1	0	0	copy fasta	PDE3B	chr11	14638804	14877044
PDE3B_chr11_14638804_14877044	0/0	t0010	2657	1	1	0	0	0	0	copy fasta	PDE3B	chr11	14638804	14877044
PDE3B_chr11_14638804_14877044	0/0	t0011	2657	1	0	1	0	0	0	copy fasta	PDE3B	chr11	14638804	14877044
PDE3B_chr11_14638804_14877044	0/0	t0012	2657	1	1	0	0	0	0	copy fasta	PDE3B	chr11	14638804	14877044
PDE3B_chr11_14638804_14877044	0/0	t0013	2657	1	0	0	1	0	0	copy fasta	PDE3B	chr11	14638804	14877044
PDE3B_chr11_14638804_14877044	0/0	t0014	2657	1	1	0	0	0	0	copy fasta	PDE3B	chr11	14638804	14877044
PDE3B_chr11_14638804_14877044	1/0	t0015	2657	1	0	0	0	0	0	copy fasta	PDE3B	chr11	14638804	14877044
PDE4A_chr19_10415538_10474630	1/0	t0001	2237	83	9	18	42	4	9	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/1	t0002	2237	74	26	19	17	2	9	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/0	t0003	2237	37	1	1	34	0	1	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/0	t0004	2237	36	10	6	16	2	2	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/0	t0005	2237	19	6	2	2	2	7	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/0	t0006	2237	12	6	4	1	1	0	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/0	t0007	2237	7	5	2	0	0	0	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/0	t0008	2236	7	0	0	7	0	0	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/0	t0009	2236	6	6	0	0	0	0	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/0	t0010	2237	3	3	0	0	0	0	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/0	t0011	2237	3	0	0	3	0	0	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/0	t0012	2237	2	0	0	2	0	0	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/0	t0013	2237	2	2	0	0	0	0	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/0	t0014	2237	2	2	0	0	0	0	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/0	t0015	2238	2	0	0	1	0	1	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/0	t0016	2236	2	2	0	0	0	0	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/0	t0017	2237	2	2	0	0	0	0	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/0	t0018	2238	2	0	0	2	0	0	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/0	t0019	2236	2	0	0	2	0	0	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/0	t0020	2237	1	1	0	0	0	0	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/0	t0021	2237	1	1	0	0	0	0	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/0	t0022	2238	1	0	1	0	0	0	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/0	t0023	2237	1	0	0	1	0	0	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/0	t0024	2237	1	1	0	0	0	0	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/0	t0025	2237	1	0	0	0	0	1	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/0	t0026	2237	1	1	0	0	0	0	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/0	t0027	2237	1	1	0	0	0	0	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/0	t0028	2238	1	1	0	0	0	0	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/0	t0029	2237	1	1	0	0	0	0	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/0	t0030	2237	1	1	0	0	0	0	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/0	t0031	2238	1	0	0	0	1	0	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/0	t0032	2237	1	0	1	0	0	0	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/0	t0033	2237	1	0	0	0	0	1	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/0	t0034	2237	1	0	0	0	0	1	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/0	t0035	2237	1	0	0	1	0	0	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/0	t0036	2237	1	0	0	0	0	1	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/0	t0037	2237	1	0	0	0	0	1	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/0	t0038	2237	1	0	0	1	0	0	copy fasta	PDE4A	chr19	10415538	10474630
PDE4B_chr1_65787895_66379574	0/0	t0001	2321	69	19	18	19	2	11	copy fasta	PDE4B	chr1	65787895	66379574