JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PDE4B_chr1_65787895_66379574	0/0	t0002	2327	11	6	2	1	0	2	copy fasta	PDE4B	chr1	65787895	66379574
PDE4B_chr1_65787895_66379574	0/0	t0003	2327	8	1	6	1	0	0	copy fasta	PDE4B	chr1	65787895	66379574
PDE4B_chr1_65787895_66379574	0/0	t0004	2321	7	2	4	0	0	1	copy fasta	PDE4B	chr1	65787895	66379574
PDE4B_chr1_65787895_66379574	0/0	t0005	2321	5	5	0	0	0	0	copy fasta	PDE4B	chr1	65787895	66379574
PDE4B_chr1_65787895_66379574	0/0	t0006	2327	3	2	1	0	0	0	copy fasta	PDE4B	chr1	65787895	66379574
PDE4B_chr1_65787895_66379574	0/0	t0007	2327	2	1	1	0	0	0	copy fasta	PDE4B	chr1	65787895	66379574
PDE4B_chr1_65787895_66379574	0/0	t0008	2321	2	2	0	0	0	0	copy fasta	PDE4B	chr1	65787895	66379574
PDE4B_chr1_65787895_66379574	0/0	t0009	2321	2	2	0	0	0	0	copy fasta	PDE4B	chr1	65787895	66379574
PDE4B_chr1_65787895_66379574	0/0	t0010	2321	1	0	1	0	0	0	copy fasta	PDE4B	chr1	65787895	66379574
PDE4B_chr1_65787895_66379574	0/0	t0011	2327	1	0	1	0	0	0	copy fasta	PDE4B	chr1	65787895	66379574
PDE4B_chr1_65787895_66379574	0/0	t0012	2321	1	0	0	1	0	0	copy fasta	PDE4B	chr1	65787895	66379574
PDE4B_chr1_65787895_66379574	0/0	t0013	2321	1	0	1	0	0	0	copy fasta	PDE4B	chr1	65787895	66379574
PDE4B_chr1_65787895_66379574	0/0	t0014	2321	1	1	0	0	0	0	copy fasta	PDE4B	chr1	65787895	66379574
PDE4B_chr1_65787895_66379574	0/0	t0015	2327	1	0	1	0	0	0	copy fasta	PDE4B	chr1	65787895	66379574
PDE4B_chr1_65787895_66379574	0/0	t0016	2327	1	1	0	0	0	0	copy fasta	PDE4B	chr1	65787895	66379574
PDE4B_chr1_65787895_66379574	0/0	t0017	2321	1	1	0	0	0	0	copy fasta	PDE4B	chr1	65787895	66379574
PDE4B_chr1_65787895_66379574	0/0	t0018	2321	1	1	0	0	0	0	copy fasta	PDE4B	chr1	65787895	66379574
PDE4C_chr19_18202965_18231438	0/1	t0001	2987	132	23	18	69	4	17	copy fasta	PDE4C	chr19	18202965	18231438
PDE4C_chr19_18202965_18231438	1/0	t0002	2988	131	36	21	55	1	17	copy fasta	PDE4C	chr19	18202965	18231438
PDE4C_chr19_18202965_18231438	0/0	t0003	2986	53	0	16	31	2	4	copy fasta	PDE4C	chr19	18202965	18231438
PDE4C_chr19_18202965_18231438	0/0	t0004	2986	35	20	8	0	4	3	copy fasta	PDE4C	chr19	18202965	18231438
PDE4C_chr19_18202965_18231438	0/0	t0005	2988	10	0	0	10	0	0	copy fasta	PDE4C	chr19	18202965	18231438
PDE4C_chr19_18202965_18231438	0/0	t0006	2983	7	0	5	0	0	2	copy fasta	PDE4C	chr19	18202965	18231438
PDE4C_chr19_18202965_18231438	0/0	t0007	2987	6	0	0	4	1	1	copy fasta	PDE4C	chr19	18202965	18231438
PDE4C_chr19_18202965_18231438	0/0	t0008	2983	3	3	0	0	0	0	copy fasta	PDE4C	chr19	18202965	18231438
PDE4C_chr19_18202965_18231438	0/0	t0009	2986	2	0	2	0	0	0	copy fasta	PDE4C	chr19	18202965	18231438
PDE4C_chr19_18202965_18231438	0/0	t0010	2987	2	2	0	0	0	0	copy fasta	PDE4C	chr19	18202965	18231438
PDE4C_chr19_18202965_18231438	0/0	t0011	2988	2	2	0	0	0	0	copy fasta	PDE4C	chr19	18202965	18231438
PDE4C_chr19_18202965_18231438	0/0	t0012	2988	2	0	2	0	0	0	copy fasta	PDE4C	chr19	18202965	18231438
PDE4C_chr19_18202965_18231438	0/0	t0013	2986	1	1	0	0	0	0	copy fasta	PDE4C	chr19	18202965	18231438
PDE4C_chr19_18202965_18231438	0/0	t0014	2987	1	0	0	1	0	0	copy fasta	PDE4C	chr19	18202965	18231438
PDE4C_chr19_18202965_18231438	0/0	t0015	2987	1	0	0	1	0	0	copy fasta	PDE4C	chr19	18202965	18231438
PDE4C_chr19_18202965_18231438	0/0	t0016	2984	1	1	0	0	0	0	copy fasta	PDE4C	chr19	18202965	18231438
PDE4C_chr19_18202965_18231438	0/0	t0017	2987	1	0	1	0	0	0	copy fasta	PDE4C	chr19	18202965	18231438
PDE4C_chr19_18202965_18231438	0/0	t0018	2986	1	0	1	0	0	0	copy fasta	PDE4C	chr19	18202965	18231438
PDE4C_chr19_18202965_18231438	0/0	t0019	2988	1	1	0	0	0	0	copy fasta	PDE4C	chr19	18202965	18231438
PDE4C_chr19_18202965_18231438	0/0	t0020	2999	1	0	0	1	0	0	copy fasta	PDE4C	chr19	18202965	18231438
PDE4C_chr19_18202965_18231438	0/0	t0021	2988	1	1	0	0	0	0	copy fasta	PDE4C	chr19	18202965	18231438
PDE4DIP_chr1_148839428_149038016	0/0	t0001	1379	3	0	2	1	0	0	copy fasta	PDE4DIP	chr1	148839428	149038016
PDE4DIP_chr1_148839428_149038016	0/0	t0002	1379	2	0	1	0	0	1	copy fasta	PDE4DIP	chr1	148839428	149038016
PDE4DIP_chr1_148839428_149038016	0/0	t0003	1379	2	1	1	0	0	0	copy fasta	PDE4DIP	chr1	148839428	149038016
PDE4DIP_chr1_148839428_149038016	0/0	t0004	1379	2	1	1	0	0	0	copy fasta	PDE4DIP	chr1	148839428	149038016
PDE4DIP_chr1_148839428_149038016	0/1	t0005	1379	2	0	1	0	0	0	copy fasta	PDE4DIP	chr1	148839428	149038016
PDE4DIP_chr1_148839428_149038016	0/0	t0006	1379	2	0	1	0	0	1	copy fasta	PDE4DIP	chr1	148839428	149038016
PDE4DIP_chr1_148839428_149038016	1/0	t0007	1379	2	0	1	0	0	0	copy fasta	PDE4DIP	chr1	148839428	149038016
PDE4DIP_chr1_148839428_149038016	0/0	t0008	1379	1	1	0	0	0	0	copy fasta	PDE4DIP	chr1	148839428	149038016
PDE4DIP_chr1_148839428_149038016	0/0	t0009	1379	1	0	0	1	0	0	copy fasta	PDE4DIP	chr1	148839428	149038016
PDE4DIP_chr1_148839428_149038016	0/0	t0010	1379	1	1	0	0	0	0	copy fasta	PDE4DIP	chr1	148839428	149038016
PDE4DIP_chr1_148839428_149038016	0/0	t0011	1379	1	0	1	0	0	0	copy fasta	PDE4DIP	chr1	148839428	149038016
PDE4DIP_chr1_148839428_149038016	0/0	t0012	1379	1	1	0	0	0	0	copy fasta	PDE4DIP	chr1	148839428	149038016