JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PDE6A_chr5_149852953_149949793	0/0	t0043	3063	1	1	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0044	3062	1	0	0	1	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0045	3065	1	1	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0046	3065	1	0	0	0	0	1	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0047	3063	1	1	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0048	3063	1	1	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0049	3062	1	1	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0050	3062	1	1	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0051	3063	1	1	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0052	3066	1	1	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0053	3089	1	1	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0054	3089	1	1	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0055	3088	1	1	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0056	3063	1	1	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0057	3075	1	0	1	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0058	3066	1	1	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0059	3066	1	1	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0060	3062	1	0	0	1	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0061	3066	1	0	0	1	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0062	3063	1	0	0	1	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0063	3065	1	0	0	1	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0064	3063	1	0	0	0	0	1	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0065	3066	1	1	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0066	3066	1	0	0	1	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0067	3066	1	1	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0068	3066	1	0	1	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0069	3066	1	1	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0070	3065	1	0	0	0	0	1	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0071	3065	1	0	1	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0072	3065	1	0	0	1	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0073	3065	1	1	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0074	3065	1	1	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0075	3063	1	1	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0076	3063	1	0	1	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	1/0	t0077	3063	1	0	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0078	3065	1	1	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0079	3062	1	0	1	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0080	3063	1	0	0	0	0	1	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0081	3062	1	0	0	0	0	1	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0082	3062	1	0	0	0	0	1	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0083	3066	1	0	0	1	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0084	3062	1	1	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6B_chr4_620573_675782	0/1	t0001	730	113	26	28	41	5	12	copy fasta	PDE6B	chr4	620573	675782
PDE6B_chr4_620573_675782	1/0	t0002	730	96	37	13	36	2	7	copy fasta	PDE6B	chr4	620573	675782
PDE6B_chr4_620573_675782	0/0	t0003	729	50	3	1	41	0	5	copy fasta	PDE6B	chr4	620573	675782
PDE6B_chr4_620573_675782	0/0	t0004	731	13	6	4	2	1	0	copy fasta	PDE6B	chr4	620573	675782
PDE6B_chr4_620573_675782	0/0	t0005	732	12	10	2	0	0	0	copy fasta	PDE6B	chr4	620573	675782
PDE6B_chr4_620573_675782	0/0	t0006	729	6	0	2	2	0	2	copy fasta	PDE6B	chr4	620573	675782
PDE6B_chr4_620573_675782	0/0	t0007	731	5	2	0	3	0	0	copy fasta	PDE6B	chr4	620573	675782
PDE6B_chr4_620573_675782	0/0	t0008	730	4	1	2	0	0	1	copy fasta	PDE6B	chr4	620573	675782