JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PDE6B_chr4_620573_675782	0/0	t0009	731	3	3	0	0	0	0	copy fasta	PDE6B	chr4	620573	675782
PDE6B_chr4_620573_675782	0/0	t0010	731	2	2	0	0	0	0	copy fasta	PDE6B	chr4	620573	675782
PDE6B_chr4_620573_675782	0/0	t0011	732	1	1	0	0	0	0	copy fasta	PDE6B	chr4	620573	675782
PDE6B_chr4_620573_675782	0/0	t0012	731	1	1	0	0	0	0	copy fasta	PDE6B	chr4	620573	675782
PDE6B_chr4_620573_675782	0/0	t0013	730	1	0	0	0	0	1	copy fasta	PDE6B	chr4	620573	675782
PDE6B_chr4_620573_675782	0/0	t0014	730	1	0	0	1	0	0	copy fasta	PDE6B	chr4	620573	675782
PDE6C_chr10_93607537_93671010	1/1	t0001	782	364	76	65	168	12	41	copy fasta	PDE6C	chr10	93607537	93671010
PDE6C_chr10_93607537_93671010	0/0	t0002	782	8	7	1	0	0	0	copy fasta	PDE6C	chr10	93607537	93671010
PDE6C_chr10_93607537_93671010	0/0	t0003	782	7	7	0	0	0	0	copy fasta	PDE6C	chr10	93607537	93671010
PDE6C_chr10_93607537_93671010	0/0	t0004	782	2	0	0	2	0	0	copy fasta	PDE6C	chr10	93607537	93671010
PDE6C_chr10_93607537_93671010	0/0	t0005	782	1	0	0	0	0	1	copy fasta	PDE6C	chr10	93607537	93671010
PDE6C_chr10_93607537_93671010	0/0	t0006	782	1	1	0	0	0	0	copy fasta	PDE6C	chr10	93607537	93671010
PDE6C_chr10_93607537_93671010	0/0	t0007	782	1	1	0	0	0	0	copy fasta	PDE6C	chr10	93607537	93671010
PDE6D_chr2_231727433_231786282	1/1	t0001	688	176	72	38	35	10	19	copy fasta	PDE6D	chr2	231727433	231786282
PDE6D_chr2_231727433_231786282	0/0	t0002	688	85	22	23	23	7	10	copy fasta	PDE6D	chr2	231727433	231786282
PDE6D_chr2_231727433_231786282	0/0	t0003	688	4	0	1	1	1	1	copy fasta	PDE6D	chr2	231727433	231786282
PDE6D_chr2_231727433_231786282	0/0	t0004	688	1	0	0	1	0	0	copy fasta	PDE6D	chr2	231727433	231786282
PDE6G_chr17_81645459_81661542	0/0	t0001	725	270	47	46	143	7	27	copy fasta	PDE6G	chr17	81645459	81661542
PDE6G_chr17_81645459_81661542	0/0	t0002	724	58	0	2	50	2	4	copy fasta	PDE6G	chr17	81645459	81661542
PDE6G_chr17_81645459_81661542	1/0	t0003	725	58	26	20	0	3	8	copy fasta	PDE6G	chr17	81645459	81661542
PDE6G_chr17_81645459_81661542	0/1	t0004	725	19	4	5	0	4	5	copy fasta	PDE6G	chr17	81645459	81661542
PDE6G_chr17_81645459_81661542	0/0	t0005	724	16	2	7	0	2	5	copy fasta	PDE6G	chr17	81645459	81661542
PDE6G_chr17_81645459_81661542	0/0	t0006	724	7	7	0	0	0	0	copy fasta	PDE6G	chr17	81645459	81661542
PDE6G_chr17_81645459_81661542	0/0	t0007	725	4	4	0	0	0	0	copy fasta	PDE6G	chr17	81645459	81661542
PDE6G_chr17_81645459_81661542	0/0	t0008	725	1	0	0	1	0	0	copy fasta	PDE6G	chr17	81645459	81661542
PDE6G_chr17_81645459_81661542	0/0	t0009	725	1	0	0	0	0	1	copy fasta	PDE6G	chr17	81645459	81661542
PDE6H_chr12_14968042_14986865	1/1	t0001	476	364	77	69	179	9	28	copy fasta	PDE6H	chr12	14968042	14986865
PDE6H_chr12_14968042_14986865	0/0	t0002	476	63	10	3	35	3	12	copy fasta	PDE6H	chr12	14968042	14986865
PDE6H_chr12_14968042_14986865	0/0	t0003	476	12	0	0	12	0	0	copy fasta	PDE6H	chr12	14968042	14986865
PDE6H_chr12_14968042_14986865	0/0	t0004	476	3	3	0	0	0	0	copy fasta	PDE6H	chr12	14968042	14986865
PDE6H_chr12_14968042_14986865	0/0	t0005	476	2	2	0	0	0	0	copy fasta	PDE6H	chr12	14968042	14986865
PDE6H_chr12_14968042_14986865	0/0	t0006	476	2	2	0	0	0	0	copy fasta	PDE6H	chr12	14968042	14986865
PDE6H_chr12_14968042_14986865	0/0	t0007	476	1	0	0	1	0	0	copy fasta	PDE6H	chr12	14968042	14986865
PDE6H_chr12_14968042_14986865	0/0	t0008	476	1	0	0	1	0	0	copy fasta	PDE6H	chr12	14968042	14986865
PDE7A_chr8_65709334_65847064	1/1	t0001	5513	20	2	5	7	2	2	copy fasta	PDE7A	chr8	65709334	65847064
PDE7A_chr8_65709334_65847064	0/0	t0002	5517	17	0	1	11	0	5	copy fasta	PDE7A	chr8	65709334	65847064
PDE7A_chr8_65709334_65847064	0/0	t0003	5516	12	1	4	6	0	1	copy fasta	PDE7A	chr8	65709334	65847064
PDE7A_chr8_65709334_65847064	0/0	t0004	5515	12	0	3	1	5	3	copy fasta	PDE7A	chr8	65709334	65847064
PDE7A_chr8_65709334_65847064	0/0	t0005	5512	11	0	2	8	0	1	copy fasta	PDE7A	chr8	65709334	65847064
PDE7A_chr8_65709334_65847064	0/0	t0006	5504	9	6	3	0	0	0	copy fasta	PDE7A	chr8	65709334	65847064
PDE7A_chr8_65709334_65847064	0/0	t0007	5512	8	0	6	0	1	1	copy fasta	PDE7A	chr8	65709334	65847064
PDE7A_chr8_65709334_65847064	0/0	t0008	5516	8	6	1	1	0	0	copy fasta	PDE7A	chr8	65709334	65847064
PDE7A_chr8_65709334_65847064	0/0	t0009	5514	7	6	1	0	0	0	copy fasta	PDE7A	chr8	65709334	65847064
PDE7A_chr8_65709334_65847064	0/0	t0010	5505	6	3	0	3	0	0	copy fasta	PDE7A	chr8	65709334	65847064
PDE7A_chr8_65709334_65847064	0/0	t0011	5505	6	0	0	6	0	0	copy fasta	PDE7A	chr8	65709334	65847064
PDE7A_chr8_65709334_65847064	0/0	t0012	5512	6	4	2	0	0	0	copy fasta	PDE7A	chr8	65709334	65847064
PDE7A_chr8_65709334_65847064	0/0	t0013	5513	6	3	1	2	0	0	copy fasta	PDE7A	chr8	65709334	65847064
PDE7A_chr8_65709334_65847064	0/0	t0014	5513	6	0	5	1	0	0	copy fasta	PDE7A	chr8	65709334	65847064
PDE7A_chr8_65709334_65847064	0/0	t0015	5505	5	5	0	0	0	0	copy fasta	PDE7A	chr8	65709334	65847064
PDE7A_chr8_65709334_65847064	0/0	t0016	5504	5	5	0	0	0	0	copy fasta	PDE7A	chr8	65709334	65847064