JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PDE7A_chr8_65709334_65847064	0/0	t0067	5513	1	1	0	0	0	0	copy fasta	PDE7A	chr8	65709334	65847064
PDE7A_chr8_65709334_65847064	0/0	t0068	5513	1	0	0	1	0	0	copy fasta	PDE7A	chr8	65709334	65847064
PDE7A_chr8_65709334_65847064	0/0	t0069	5510	1	0	0	1	0	0	copy fasta	PDE7A	chr8	65709334	65847064
PDE7A_chr8_65709334_65847064	0/0	t0070	5517	1	1	0	0	0	0	copy fasta	PDE7A	chr8	65709334	65847064
PDE7A_chr8_65709334_65847064	0/0	t0071	5516	1	0	0	1	0	0	copy fasta	PDE7A	chr8	65709334	65847064
PDE7A_chr8_65709334_65847064	0/0	t0072	5516	1	0	0	1	0	0	copy fasta	PDE7A	chr8	65709334	65847064
PDE7A_chr8_65709334_65847064	0/0	t0073	5519	1	0	0	1	0	0	copy fasta	PDE7A	chr8	65709334	65847064
PDE7A_chr8_65709334_65847064	0/0	t0074	5520	1	0	0	0	0	1	copy fasta	PDE7A	chr8	65709334	65847064
PDE7A_chr8_65709334_65847064	0/0	t0075	5518	1	1	0	0	0	0	copy fasta	PDE7A	chr8	65709334	65847064
PDE7A_chr8_65709334_65847064	0/0	t0076	5516	1	1	0	0	0	0	copy fasta	PDE7A	chr8	65709334	65847064
PDE7A_chr8_65709334_65847064	0/0	t0077	5517	1	1	0	0	0	0	copy fasta	PDE7A	chr8	65709334	65847064
PDE7A_chr8_65709334_65847064	0/0	t0078	5516	1	0	1	0	0	0	copy fasta	PDE7A	chr8	65709334	65847064
PDE7A_chr8_65709334_65847064	0/0	t0079	5514	1	0	1	0	0	0	copy fasta	PDE7A	chr8	65709334	65847064
PDE7A_chr8_65709334_65847064	0/0	t0080	5516	1	1	0	0	0	0	copy fasta	PDE7A	chr8	65709334	65847064
PDE7A_chr8_65709334_65847064	0/0	t0081	5515	1	0	0	0	1	0	copy fasta	PDE7A	chr8	65709334	65847064
PDE7A_chr8_65709334_65847064	0/0	t0082	5518	1	0	1	0	0	0	copy fasta	PDE7A	chr8	65709334	65847064
PDE7A_chr8_65709334_65847064	0/0	t0083	5519	1	1	0	0	0	0	copy fasta	PDE7A	chr8	65709334	65847064
PDE7A_chr8_65709334_65847064	0/0	t0084	5522	1	1	0	0	0	0	copy fasta	PDE7A	chr8	65709334	65847064
PDE7A_chr8_65709334_65847064	0/0	t0085	5523	1	1	0	0	0	0	copy fasta	PDE7A	chr8	65709334	65847064
PDE7A_chr8_65709334_65847064	0/0	t0086	5523	1	1	0	0	0	0	copy fasta	PDE7A	chr8	65709334	65847064
PDE7A_chr8_65709334_65847064	0/0	t0087	5521	1	0	0	0	1	0	copy fasta	PDE7A	chr8	65709334	65847064
PDE7A_chr8_65709334_65847064	0/0	t0088	5525	1	1	0	0	0	0	copy fasta	PDE7A	chr8	65709334	65847064
PDE7A_chr8_65709334_65847064	0/0	t0089	5529	1	1	0	0	0	0	copy fasta	PDE7A	chr8	65709334	65847064
PDE7A_chr8_65709334_65847064	0/0	t0090	5532	1	1	0	0	0	0	copy fasta	PDE7A	chr8	65709334	65847064
PDE7A_chr8_65709334_65847064	0/0	t0091	5534	1	1	0	0	0	0	copy fasta	PDE7A	chr8	65709334	65847064
PDE7B_chr6_135846701_136200574	1/1	t0001	4033	56	9	17	18	2	8	copy fasta	PDE7B	chr6	135846701	136200574
PDE7B_chr6_135846701_136200574	0/0	t0002	4033	13	9	4	0	0	0	copy fasta	PDE7B	chr6	135846701	136200574
PDE7B_chr6_135846701_136200574	0/0	t0003	4034	13	1	5	6	0	1	copy fasta	PDE7B	chr6	135846701	136200574
PDE7B_chr6_135846701_136200574	0/0	t0004	4030	7	4	0	3	0	0	copy fasta	PDE7B	chr6	135846701	136200574
PDE7B_chr6_135846701_136200574	0/0	t0005	4030	5	5	0	0	0	0	copy fasta	PDE7B	chr6	135846701	136200574
PDE7B_chr6_135846701_136200574	0/0	t0006	4029	3	2	0	0	0	1	copy fasta	PDE7B	chr6	135846701	136200574
PDE7B_chr6_135846701_136200574	0/0	t0007	4031	3	1	0	2	0	0	copy fasta	PDE7B	chr6	135846701	136200574
PDE7B_chr6_135846701_136200574	0/0	t0008	4035	3	0	0	3	0	0	copy fasta	PDE7B	chr6	135846701	136200574
PDE7B_chr6_135846701_136200574	0/0	t0009	4033	2	0	0	0	0	2	copy fasta	PDE7B	chr6	135846701	136200574
PDE7B_chr6_135846701_136200574	0/0	t0010	4034	2	2	0	0	0	0	copy fasta	PDE7B	chr6	135846701	136200574
PDE7B_chr6_135846701_136200574	0/0	t0011	4034	2	0	0	2	0	0	copy fasta	PDE7B	chr6	135846701	136200574
PDE7B_chr6_135846701_136200574	0/0	t0012	4033	2	0	2	0	0	0	copy fasta	PDE7B	chr6	135846701	136200574
PDE7B_chr6_135846701_136200574	0/0	t0013	4027	2	2	0	0	0	0	copy fasta	PDE7B	chr6	135846701	136200574
PDE7B_chr6_135846701_136200574	0/0	t0014	4034	2	2	0	0	0	0	copy fasta	PDE7B	chr6	135846701	136200574
PDE7B_chr6_135846701_136200574	0/0	t0015	4038	2	2	0	0	0	0	copy fasta	PDE7B	chr6	135846701	136200574
PDE7B_chr6_135846701_136200574	0/0	t0016	4034	1	1	0	0	0	0	copy fasta	PDE7B	chr6	135846701	136200574
PDE7B_chr6_135846701_136200574	0/0	t0017	4032	1	0	1	0	0	0	copy fasta	PDE7B	chr6	135846701	136200574
PDE7B_chr6_135846701_136200574	0/0	t0018	4029	1	1	0	0	0	0	copy fasta	PDE7B	chr6	135846701	136200574
PDE7B_chr6_135846701_136200574	0/0	t0019	4032	1	1	0	0	0	0	copy fasta	PDE7B	chr6	135846701	136200574
PDE7B_chr6_135846701_136200574	0/0	t0020	4033	1	1	0	0	0	0	copy fasta	PDE7B	chr6	135846701	136200574
PDE7B_chr6_135846701_136200574	0/0	t0021	4033	1	1	0	0	0	0	copy fasta	PDE7B	chr6	135846701	136200574
PDE7B_chr6_135846701_136200574	0/0	t0022	4033	1	0	1	0	0	0	copy fasta	PDE7B	chr6	135846701	136200574
PDE7B_chr6_135846701_136200574	0/0	t0023	4033	1	1	0	0	0	0	copy fasta	PDE7B	chr6	135846701	136200574
PDE7B_chr6_135846701_136200574	0/0	t0024	4033	1	1	0	0	0	0	copy fasta	PDE7B	chr6	135846701	136200574
PDE7B_chr6_135846701_136200574	0/0	t0025	4032	1	1	0	0	0	0	copy fasta	PDE7B	chr6	135846701	136200574