JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PDE7B_chr6_135846701_136200574	0/0	t0026	4034	1	0	0	1	0	0	copy fasta	PDE7B	chr6	135846701	136200574
PDE7B_chr6_135846701_136200574	0/0	t0027	4029	1	1	0	0	0	0	copy fasta	PDE7B	chr6	135846701	136200574
PDE7B_chr6_135846701_136200574	0/0	t0028	4027	1	1	0	0	0	0	copy fasta	PDE7B	chr6	135846701	136200574
PDE7B_chr6_135846701_136200574	0/0	t0029	4033	1	1	0	0	0	0	copy fasta	PDE7B	chr6	135846701	136200574
PDE7B_chr6_135846701_136200574	0/0	t0030	4031	1	1	0	0	0	0	copy fasta	PDE7B	chr6	135846701	136200574
PDE7B_chr6_135846701_136200574	0/0	t0031	4031	1	1	0	0	0	0	copy fasta	PDE7B	chr6	135846701	136200574
PDE7B_chr6_135846701_136200574	0/0	t0032	4031	1	0	0	1	0	0	copy fasta	PDE7B	chr6	135846701	136200574
PDE7B_chr6_135846701_136200574	0/0	t0033	4031	1	1	0	0	0	0	copy fasta	PDE7B	chr6	135846701	136200574
PDE7B_chr6_135846701_136200574	0/0	t0034	4028	1	1	0	0	0	0	copy fasta	PDE7B	chr6	135846701	136200574
PDE7B_chr6_135846701_136200574	0/0	t0035	4030	1	1	0	0	0	0	copy fasta	PDE7B	chr6	135846701	136200574
PDE7B_chr6_135846701_136200574	0/0	t0036	4030	1	1	0	0	0	0	copy fasta	PDE7B	chr6	135846701	136200574
PDE7B_chr6_135846701_136200574	0/0	t0037	4028	1	1	0	0	0	0	copy fasta	PDE7B	chr6	135846701	136200574
PDE7B_chr6_135846701_136200574	0/0	t0038	4028	1	1	0	0	0	0	copy fasta	PDE7B	chr6	135846701	136200574
PDE7B_chr6_135846701_136200574	0/0	t0039	4040	1	1	0	0	0	0	copy fasta	PDE7B	chr6	135846701	136200574
PDE7B_chr6_135846701_136200574	0/0	t0040	4039	1	1	0	0	0	0	copy fasta	PDE7B	chr6	135846701	136200574
PDE8A_chr15_84976856_85144142	1/1	t0001	1547	323	79	51	142	15	34	copy fasta	PDE8A	chr15	84976856	85144142
PDE8A_chr15_84976856_85144142	0/0	t0002	1547	12	7	5	0	0	0	copy fasta	PDE8A	chr15	84976856	85144142
PDE8A_chr15_84976856_85144142	0/0	t0003	1547	2	0	1	0	1	0	copy fasta	PDE8A	chr15	84976856	85144142
PDE8A_chr15_84976856_85144142	0/0	t0004	1547	2	1	1	0	0	0	copy fasta	PDE8A	chr15	84976856	85144142
PDE8A_chr15_84976856_85144142	0/0	t0005	1558	2	0	0	2	0	0	copy fasta	PDE8A	chr15	84976856	85144142
PDE8A_chr15_84976856_85144142	0/0	t0006	1547	1	0	0	1	0	0	copy fasta	PDE8A	chr15	84976856	85144142
PDE8A_chr15_84976856_85144142	0/0	t0007	1547	1	1	0	0	0	0	copy fasta	PDE8A	chr15	84976856	85144142
PDE8A_chr15_84976856_85144142	0/0	t0008	1524	1	0	0	1	0	0	copy fasta	PDE8A	chr15	84976856	85144142
PDE8B_chr5_77205680_77433256	0/0	t0001	1947	42	3	11	21	0	7	copy fasta	PDE8B	chr5	77205680	77433256
PDE8B_chr5_77205680_77433256	1/1	t0002	1949	38	6	12	9	4	5	copy fasta	PDE8B	chr5	77205680	77433256
PDE8B_chr5_77205680_77433256	0/0	t0003	1949	34	11	2	17	0	4	copy fasta	PDE8B	chr5	77205680	77433256
PDE8B_chr5_77205680_77433256	0/0	t0004	1946	30	2	4	17	1	6	copy fasta	PDE8B	chr5	77205680	77433256
PDE8B_chr5_77205680_77433256	0/0	t0005	1949	26	2	2	20	0	2	copy fasta	PDE8B	chr5	77205680	77433256
PDE8B_chr5_77205680_77433256	0/0	t0006	1950	25	0	1	23	0	1	copy fasta	PDE8B	chr5	77205680	77433256
PDE8B_chr5_77205680_77433256	0/0	t0007	1947	14	13	0	0	1	0	copy fasta	PDE8B	chr5	77205680	77433256
PDE8B_chr5_77205680_77433256	0/0	t0008	1949	14	12	2	0	0	0	copy fasta	PDE8B	chr5	77205680	77433256
PDE8B_chr5_77205680_77433256	0/0	t0009	1947	13	0	0	8	3	2	copy fasta	PDE8B	chr5	77205680	77433256
PDE8B_chr5_77205680_77433256	0/0	t0010	1947	7	1	5	0	1	0	copy fasta	PDE8B	chr5	77205680	77433256
PDE8B_chr5_77205680_77433256	0/0	t0011	1948	5	3	0	2	0	0	copy fasta	PDE8B	chr5	77205680	77433256
PDE8B_chr5_77205680_77433256	0/0	t0012	1950	4	1	3	0	0	0	copy fasta	PDE8B	chr5	77205680	77433256
PDE8B_chr5_77205680_77433256	0/0	t0013	1951	4	1	0	0	1	2	copy fasta	PDE8B	chr5	77205680	77433256
PDE8B_chr5_77205680_77433256	0/0	t0014	1948	4	1	0	2	0	1	copy fasta	PDE8B	chr5	77205680	77433256
PDE8B_chr5_77205680_77433256	0/0	t0015	1949	3	0	2	0	1	0	copy fasta	PDE8B	chr5	77205680	77433256
PDE8B_chr5_77205680_77433256	0/0	t0016	1953	3	3	0	0	0	0	copy fasta	PDE8B	chr5	77205680	77433256
PDE8B_chr5_77205680_77433256	0/0	t0017	1948	3	0	0	3	0	0	copy fasta	PDE8B	chr5	77205680	77433256
PDE8B_chr5_77205680_77433256	0/0	t0018	1950	3	2	1	0	0	0	copy fasta	PDE8B	chr5	77205680	77433256
PDE8B_chr5_77205680_77433256	0/0	t0019	1950	3	0	0	3	0	0	copy fasta	PDE8B	chr5	77205680	77433256
PDE8B_chr5_77205680_77433256	0/0	t0020	1947	3	3	0	0	0	0	copy fasta	PDE8B	chr5	77205680	77433256
PDE8B_chr5_77205680_77433256	0/0	t0021	1949	3	0	0	0	2	1	copy fasta	PDE8B	chr5	77205680	77433256
PDE8B_chr5_77205680_77433256	0/0	t0022	1948	2	2	0	0	0	0	copy fasta	PDE8B	chr5	77205680	77433256
PDE8B_chr5_77205680_77433256	0/0	t0023	1952	2	2	0	0	0	0	copy fasta	PDE8B	chr5	77205680	77433256
PDE8B_chr5_77205680_77433256	0/0	t0024	1948	2	2	0	0	0	0	copy fasta	PDE8B	chr5	77205680	77433256
PDE8B_chr5_77205680_77433256	0/0	t0025	1951	2	0	0	2	0	0	copy fasta	PDE8B	chr5	77205680	77433256
PDE8B_chr5_77205680_77433256	0/0	t0026	1946	2	2	0	0	0	0	copy fasta	PDE8B	chr5	77205680	77433256
PDE8B_chr5_77205680_77433256	0/0	t0027	1948	2	2	0	0	0	0	copy fasta	PDE8B	chr5	77205680	77433256