JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PDE8B_chr5_77205680_77433256	0/0	t0028	1946	2	0	1	0	1	0	copy fasta	PDE8B	chr5	77205680	77433256
PDE8B_chr5_77205680_77433256	0/0	t0029	1946	2	0	0	2	0	0	copy fasta	PDE8B	chr5	77205680	77433256
PDE8B_chr5_77205680_77433256	0/0	t0030	1951	2	0	0	2	0	0	copy fasta	PDE8B	chr5	77205680	77433256
PDE8B_chr5_77205680_77433256	0/0	t0031	1949	2	0	1	1	0	0	copy fasta	PDE8B	chr5	77205680	77433256
PDE8B_chr5_77205680_77433256	0/0	t0032	1953	1	1	0	0	0	0	copy fasta	PDE8B	chr5	77205680	77433256
PDE8B_chr5_77205680_77433256	0/0	t0033	1947	1	0	1	0	0	0	copy fasta	PDE8B	chr5	77205680	77433256
PDE8B_chr5_77205680_77433256	0/0	t0034	1947	1	1	0	0	0	0	copy fasta	PDE8B	chr5	77205680	77433256
PDE8B_chr5_77205680_77433256	0/0	t0035	1949	1	0	0	1	0	0	copy fasta	PDE8B	chr5	77205680	77433256
PDE8B_chr5_77205680_77433256	0/0	t0036	1947	1	0	1	0	0	0	copy fasta	PDE8B	chr5	77205680	77433256
PDE8B_chr5_77205680_77433256	0/0	t0037	1949	1	0	1	0	0	0	copy fasta	PDE8B	chr5	77205680	77433256
PDE8B_chr5_77205680_77433256	0/0	t0038	1946	1	0	1	0	0	0	copy fasta	PDE8B	chr5	77205680	77433256
PDE8B_chr5_77205680_77433256	0/0	t0039	1945	1	0	0	0	1	0	copy fasta	PDE8B	chr5	77205680	77433256
PDE8B_chr5_77205680_77433256	0/0	t0040	1950	1	0	1	0	0	0	copy fasta	PDE8B	chr5	77205680	77433256
PDE8B_chr5_77205680_77433256	0/0	t0041	1949	1	1	0	0	0	0	copy fasta	PDE8B	chr5	77205680	77433256
PDE8B_chr5_77205680_77433256	0/0	t0042	1949	1	1	0	0	0	0	copy fasta	PDE8B	chr5	77205680	77433256
PDE8B_chr5_77205680_77433256	0/0	t0043	1946	1	0	0	0	0	1	copy fasta	PDE8B	chr5	77205680	77433256
PDE8B_chr5_77205680_77433256	0/0	t0044	1949	1	0	0	1	0	0	copy fasta	PDE8B	chr5	77205680	77433256
PDE9A_chr21_42648621_42780509	1/0	t0001	411	226	64	29	104	5	23	copy fasta	PDE9A	chr21	42648621	42780509
PDE9A_chr21_42648621_42780509	0/1	t0002	411	57	11	20	10	5	10	copy fasta	PDE9A	chr21	42648621	42780509
PDE9A_chr21_42648621_42780509	0/0	t0003	411	25	0	9	5	4	7	copy fasta	PDE9A	chr21	42648621	42780509
PDE9A_chr21_42648621_42780509	0/0	t0004	410	6	6	0	0	0	0	copy fasta	PDE9A	chr21	42648621	42780509
PDE9A_chr21_42648621_42780509	0/0	t0005	411	4	4	0	0	0	0	copy fasta	PDE9A	chr21	42648621	42780509
PDE9A_chr21_42648621_42780509	0/0	t0006	411	2	2	0	0	0	0	copy fasta	PDE9A	chr21	42648621	42780509
PDE9A_chr21_42648621_42780509	0/0	t0007	410	2	1	0	1	0	0	copy fasta	PDE9A	chr21	42648621	42780509
PDE9A_chr21_42648621_42780509	0/0	t0008	411	1	1	0	0	0	0	copy fasta	PDE9A	chr21	42648621	42780509
PDE9A_chr21_42648621_42780509	0/0	t0009	411	1	1	0	0	0	0	copy fasta	PDE9A	chr21	42648621	42780509
PDF_chr16_69321913_69335588	1/0	t0001	2128	204	45	52	75	9	22	copy fasta	PDF	chr16	69321913	69335588
PDF_chr16_69321913_69335588	0/0	t0002	2129	38	5	5	25	1	2	copy fasta	PDF	chr16	69321913	69335588
PDF_chr16_69321913_69335588	0/0	t0003	2129	19	5	6	5	1	2	copy fasta	PDF	chr16	69321913	69335588
PDF_chr16_69321913_69335588	0/1	t0004	2130	15	5	0	2	2	5	copy fasta	PDF	chr16	69321913	69335588
PDF_chr16_69321913_69335588	0/0	t0005	2124	11	0	0	4	0	7	copy fasta	PDF	chr16	69321913	69335588
PDF_chr16_69321913_69335588	0/0	t0006	2131	10	10	0	0	0	0	copy fasta	PDF	chr16	69321913	69335588
PDF_chr16_69321913_69335588	0/0	t0007	2135	6	1	2	2	0	1	copy fasta	PDF	chr16	69321913	69335588
PDF_chr16_69321913_69335588	0/0	t0008	2124	6	0	5	0	1	0	copy fasta	PDF	chr16	69321913	69335588
PDF_chr16_69321913_69335588	0/0	t0009	2132	5	4	1	0	0	0	copy fasta	PDF	chr16	69321913	69335588
PDF_chr16_69321913_69335588	0/0	t0010	2132	5	5	0	0	0	0	copy fasta	PDF	chr16	69321913	69335588
PDF_chr16_69321913_69335588	0/0	t0011	2127	5	1	1	2	1	0	copy fasta	PDF	chr16	69321913	69335588
PDF_chr16_69321913_69335588	0/0	t0012	2129	5	0	1	2	2	0	copy fasta	PDF	chr16	69321913	69335588
PDF_chr16_69321913_69335588	0/0	t0013	2128	4	4	0	0	0	0	copy fasta	PDF	chr16	69321913	69335588
PDF_chr16_69321913_69335588	0/0	t0014	2133	4	4	0	0	0	0	copy fasta	PDF	chr16	69321913	69335588
PDF_chr16_69321913_69335588	0/0	t0015	2136	3	0	0	3	0	0	copy fasta	PDF	chr16	69321913	69335588
PDF_chr16_69321913_69335588	0/0	t0016	2132	3	3	0	0	0	0	copy fasta	PDF	chr16	69321913	69335588
PDF_chr16_69321913_69335588	0/0	t0017	2130	2	2	0	0	0	0	copy fasta	PDF	chr16	69321913	69335588
PDF_chr16_69321913_69335588	0/0	t0018	2134	2	0	0	1	1	0	copy fasta	PDF	chr16	69321913	69335588
PDF_chr16_69321913_69335588	0/0	t0019	2130	2	0	0	1	0	1	copy fasta	PDF	chr16	69321913	69335588
PDF_chr16_69321913_69335588	0/0	t0020	2128	2	0	2	0	0	0	copy fasta	PDF	chr16	69321913	69335588
PDF_chr16_69321913_69335588	0/0	t0021	2128	1	0	0	0	0	1	copy fasta	PDF	chr16	69321913	69335588
PDF_chr16_69321913_69335588	0/0	t0022	2121	1	1	0	0	0	0	copy fasta	PDF	chr16	69321913	69335588
PDF_chr16_69321913_69335588	0/0	t0023	2128	1	0	0	1	0	0	copy fasta	PDF	chr16	69321913	69335588
PDF_chr16_69321913_69335588	0/0	t0024	2128	1	0	0	0	0	1	copy fasta	PDF	chr16	69321913	69335588