JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PDF_chr16_69321913_69335588	0/0	t0025	2129	1	0	0	1	0	0	copy fasta	PDF	chr16	69321913	69335588
PDF_chr16_69321913_69335588	0/0	t0026	2128	1	1	0	0	0	0	copy fasta	PDF	chr16	69321913	69335588
PDF_chr16_69321913_69335588	0/0	t0027	2130	1	0	0	0	0	1	copy fasta	PDF	chr16	69321913	69335588
PDF_chr16_69321913_69335588	0/0	t0028	2128	1	0	0	1	0	0	copy fasta	PDF	chr16	69321913	69335588
PDF_chr16_69321913_69335588	0/0	t0029	2118	1	1	0	0	0	0	copy fasta	PDF	chr16	69321913	69335588
PDF_chr16_69321913_69335588	0/0	t0030	2128	1	0	0	1	0	0	copy fasta	PDF	chr16	69321913	69335588
PDF_chr16_69321913_69335588	0/0	t0031	2128	1	0	0	0	0	1	copy fasta	PDF	chr16	69321913	69335588
PDF_chr16_69321913_69335588	0/0	t0032	2127	1	0	1	0	0	0	copy fasta	PDF	chr16	69321913	69335588
PDF_chr16_69321913_69335588	0/0	t0033	2128	1	1	0	0	0	0	copy fasta	PDF	chr16	69321913	69335588
PDGFA_chr7_492258_524846	0/0	t0001	2148	22	2	4	9	3	4	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0002	2156	20	0	3	15	0	2	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	1/0	t0003	2152	19	0	3	12	3	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0004	2158	11	0	2	8	0	1	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0005	2158	11	4	3	0	1	3	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0006	2157	10	0	2	6	1	1	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0007	2149	9	0	1	8	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0008	2155	8	0	1	7	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0009	2152	7	6	1	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0010	2159	6	0	0	6	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0011	2153	6	5	0	1	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0012	2135	6	0	5	0	1	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0013	2139	4	2	2	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0014	2157	4	0	1	3	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0015	2153	3	0	1	2	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0016	2148	3	2	0	0	0	1	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0017	2158	3	1	2	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0018	2150	3	0	0	2	0	1	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0019	2159	3	0	2	0	0	1	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0020	2158	3	0	0	3	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0021	2163	3	0	2	0	1	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0022	2157	3	2	0	1	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0023	2158	3	0	1	2	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0024	2154	2	0	0	2	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0025	2149	2	0	2	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0026	2158	2	0	0	0	1	1	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0027	2155	2	2	0	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0028	2139	2	0	0	0	0	2	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0029	2156	2	0	0	2	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0030	2155	2	0	2	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0031	2146	2	0	0	0	0	2	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0032	2154	2	2	0	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0033	2155	2	2	0	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0034	2147	2	1	1	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0035	2157	2	2	0	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0036	2151	2	0	2	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0037	2152	2	0	2	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0038	2162	2	0	1	0	0	1	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0039	2149	2	1	0	1	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0040	2158	2	2	0	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0041	2155	2	0	0	2	0	0	copy fasta	PDGFA	chr7	492258	524846