JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PDGFA_chr7_492258_524846	0/0	t0042	2157	2	0	1	1	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0043	2159	2	2	0	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0044	2158	1	0	0	0	0	1	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0045	2162	1	1	0	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0046	2159	1	0	0	1	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0047	2152	1	1	0	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0048	2156	1	1	0	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0049	2149	1	0	1	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0050	2158	1	1	0	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0051	2149	1	0	1	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0052	2139	1	1	0	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0053	2133	1	0	1	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0054	2144	1	1	0	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0055	2145	1	1	0	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0056	2148	1	0	1	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0057	2151	1	1	0	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0058	2151	1	0	0	1	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0059	2152	1	1	0	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0060	2153	1	0	0	1	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0061	2155	1	1	0	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0062	2156	1	1	0	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0063	2151	1	1	0	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0064	2160	1	1	0	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0065	2157	1	0	1	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0066	2156	1	0	0	1	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0067	2151	1	0	0	1	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0068	2157	1	0	0	1	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0069	2159	1	1	0	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0070	2153	1	0	0	0	1	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0071	2155	1	0	0	0	0	1	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0072	2156	1	0	0	0	0	1	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0073	2158	1	1	0	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0074	2159	1	1	0	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0075	2137	1	0	0	1	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0076	2156	1	0	0	1	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0077	2157	1	0	0	1	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0078	2157	1	0	0	1	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0079	2156	1	0	0	1	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0080	2158	1	0	1	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0081	2161	1	0	0	1	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0082	2159	1	1	0	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0083	2160	1	1	0	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0084	2147	1	0	1	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0085	2152	1	1	0	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0086	2151	1	1	0	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0087	2150	1	1	0	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0088	2156	1	1	0	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0089	2159	1	1	0	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0090	2152	1	1	0	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0091	2153	1	1	0	0	0	0	copy fasta	PDGFA	chr7	492258	524846