JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PDGFA_chr7_492258_524846	0/0	t0092	2157	1	0	0	1	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0093	2158	1	0	0	1	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0094	2156	1	0	0	1	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0095	2149	1	0	0	1	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0096	2157	1	1	0	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0097	2155	1	0	0	0	0	1	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0098	2158	1	0	0	1	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0099	2149	1	0	0	0	1	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0100	2147	1	1	0	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0101	2148	1	1	0	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0102	2157	1	0	0	0	1	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0103	2148	1	0	1	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0104	2147	1	0	0	0	0	1	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0105	2148	1	0	1	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0106	2149	1	0	0	1	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0107	2158	1	1	0	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0108	2150	1	1	0	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/1	t0109	2159	1	0	0	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0110	2154	1	1	0	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0111	2158	1	0	1	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0112	2160	1	0	0	0	1	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0113	2155	1	0	1	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0114	2156	1	1	0	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0115	2158	1	1	0	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0116	2150	1	0	1	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0117	2159	1	0	0	0	0	1	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0118	2154	1	0	1	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0119	2157	1	0	0	0	1	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0120	2143	1	1	0	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0121	2151	1	0	0	1	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0122	2148	1	0	0	1	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0123	2152	1	0	0	0	0	1	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0124	2150	1	0	0	1	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0125	2158	1	0	1	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0126	2157	1	0	0	1	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0127	2154	1	0	0	1	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0128	2156	1	0	0	1	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0129	2157	1	0	0	1	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0130	2159	1	0	0	1	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0131	2160	1	0	1	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0132	2157	1	1	0	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0133	2158	1	1	0	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0134	2148	1	0	0	0	0	1	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	t0135	2158	1	0	0	1	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFB_chr22_39218359_39249982	0/1	t0001	3003	197	23	42	98	8	25	copy fasta	PDGFB	chr22	39218359	39249982
PDGFB_chr22_39218359_39249982	1/0	t0002	3003	79	23	16	25	4	10	copy fasta	PDGFB	chr22	39218359	39249982
PDGFB_chr22_39218359_39249982	0/0	t0003	3004	27	4	7	8	0	8	copy fasta	PDGFB	chr22	39218359	39249982
PDGFB_chr22_39218359_39249982	0/0	t0004	2996	16	10	5	0	1	0	copy fasta	PDGFB	chr22	39218359	39249982
PDGFB_chr22_39218359_39249982	0/0	t0005	2997	5	4	1	0	0	0	copy fasta	PDGFB	chr22	39218359	39249982
PDGFB_chr22_39218359_39249982	0/0	t0006	2994	5	5	0	0	0	0	copy fasta	PDGFB	chr22	39218359	39249982