JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PDGFB_chr22_39218359_39249982	0/0	t0007	3003	5	1	0	0	3	1	copy fasta	PDGFB	chr22	39218359	39249982
PDGFB_chr22_39218359_39249982	0/0	t0008	3004	4	0	0	2	0	2	copy fasta	PDGFB	chr22	39218359	39249982
PDGFB_chr22_39218359_39249982	0/0	t0009	3003	4	0	0	4	0	0	copy fasta	PDGFB	chr22	39218359	39249982
PDGFB_chr22_39218359_39249982	0/0	t0010	3003	4	4	0	0	0	0	copy fasta	PDGFB	chr22	39218359	39249982
PDGFB_chr22_39218359_39249982	0/0	t0011	3003	3	3	0	0	0	0	copy fasta	PDGFB	chr22	39218359	39249982
PDGFB_chr22_39218359_39249982	0/0	t0012	2996	2	1	1	0	0	0	copy fasta	PDGFB	chr22	39218359	39249982
PDGFB_chr22_39218359_39249982	0/0	t0013	2996	2	2	0	0	0	0	copy fasta	PDGFB	chr22	39218359	39249982
PDGFB_chr22_39218359_39249982	0/0	t0014	3001	2	2	0	0	0	0	copy fasta	PDGFB	chr22	39218359	39249982
PDGFB_chr22_39218359_39249982	0/0	t0015	3003	2	2	0	0	0	0	copy fasta	PDGFB	chr22	39218359	39249982
PDGFB_chr22_39218359_39249982	0/0	t0016	3003	2	0	0	2	0	0	copy fasta	PDGFB	chr22	39218359	39249982
PDGFB_chr22_39218359_39249982	0/0	t0017	2997	1	1	0	0	0	0	copy fasta	PDGFB	chr22	39218359	39249982
PDGFB_chr22_39218359_39249982	0/0	t0018	2997	1	1	0	0	0	0	copy fasta	PDGFB	chr22	39218359	39249982
PDGFB_chr22_39218359_39249982	0/0	t0019	2997	1	1	0	0	0	0	copy fasta	PDGFB	chr22	39218359	39249982
PDGFB_chr22_39218359_39249982	0/0	t0020	2997	1	1	0	0	0	0	copy fasta	PDGFB	chr22	39218359	39249982
PDGFB_chr22_39218359_39249982	0/0	t0021	3004	1	0	0	0	0	1	copy fasta	PDGFB	chr22	39218359	39249982
PDGFB_chr22_39218359_39249982	0/0	t0022	3004	1	0	1	0	0	0	copy fasta	PDGFB	chr22	39218359	39249982
PDGFB_chr22_39218359_39249982	0/0	t0023	2996	1	1	0	0	0	0	copy fasta	PDGFB	chr22	39218359	39249982
PDGFB_chr22_39218359_39249982	0/0	t0024	2994	1	1	0	0	0	0	copy fasta	PDGFB	chr22	39218359	39249982
PDGFB_chr22_39218359_39249982	0/0	t0025	2996	1	1	0	0	0	0	copy fasta	PDGFB	chr22	39218359	39249982
PDGFB_chr22_39218359_39249982	0/0	t0026	2996	1	1	0	0	0	0	copy fasta	PDGFB	chr22	39218359	39249982
PDGFB_chr22_39218359_39249982	0/0	t0027	2996	1	1	0	0	0	0	copy fasta	PDGFB	chr22	39218359	39249982
PDGFB_chr22_39218359_39249982	0/0	t0028	3003	1	0	0	1	0	0	copy fasta	PDGFB	chr22	39218359	39249982
PDGFB_chr22_39218359_39249982	0/0	t0029	3003	1	0	0	1	0	0	copy fasta	PDGFB	chr22	39218359	39249982
PDGFB_chr22_39218359_39249982	0/0	t0030	3003	1	0	0	1	0	0	copy fasta	PDGFB	chr22	39218359	39249982
PDGFB_chr22_39218359_39249982	0/0	t0031	3003	1	0	1	0	0	0	copy fasta	PDGFB	chr22	39218359	39249982
PDGFB_chr22_39218359_39249982	0/0	t0032	3003	1	0	0	0	0	1	copy fasta	PDGFB	chr22	39218359	39249982
PDGFB_chr22_39218359_39249982	0/0	t0033	3003	1	0	0	1	0	0	copy fasta	PDGFB	chr22	39218359	39249982
PDGFB_chr22_39218359_39249982	0/0	t0034	3003	1	1	0	0	0	0	copy fasta	PDGFB	chr22	39218359	39249982
PDGFB_chr22_39218359_39249982	0/0	t0035	3003	1	0	0	1	0	0	copy fasta	PDGFB	chr22	39218359	39249982
PDGFB_chr22_39218359_39249982	0/0	t0036	3003	1	1	0	0	0	0	copy fasta	PDGFB	chr22	39218359	39249982
PDGFB_chr22_39218359_39249982	0/0	t0037	3003	1	0	0	1	0	0	copy fasta	PDGFB	chr22	39218359	39249982
PDGFB_chr22_39218359_39249982	0/0	t0038	3003	1	0	0	1	0	0	copy fasta	PDGFB	chr22	39218359	39249982
PDGFB_chr22_39218359_39249982	0/0	t0039	3003	1	1	0	0	0	0	copy fasta	PDGFB	chr22	39218359	39249982
PDGFB_chr22_39218359_39249982	0/0	t0040	3001	1	1	0	0	0	0	copy fasta	PDGFB	chr22	39218359	39249982
PDGFB_chr22_39218359_39249982	0/0	t0041	3001	1	1	0	0	0	0	copy fasta	PDGFB	chr22	39218359	39249982
PDGFB_chr22_39218359_39249982	0/0	t0042	3003	1	1	0	0	0	0	copy fasta	PDGFB	chr22	39218359	39249982
PDGFB_chr22_39218359_39249982	0/0	t0043	3003	1	1	0	0	0	0	copy fasta	PDGFB	chr22	39218359	39249982
PDGFC_chr4_156755454_156976799	1/1	t0001	3533	60	11	10	27	2	8	copy fasta	PDGFC	chr4	156755454	156976799
PDGFC_chr4_156755454_156976799	0/0	t0002	3533	59	17	8	22	0	12	copy fasta	PDGFC	chr4	156755454	156976799
PDGFC_chr4_156755454_156976799	0/0	t0003	3535	17	0	0	17	0	0	copy fasta	PDGFC	chr4	156755454	156976799
PDGFC_chr4_156755454_156976799	0/0	t0004	3532	8	8	0	0	0	0	copy fasta	PDGFC	chr4	156755454	156976799
PDGFC_chr4_156755454_156976799	0/0	t0005	3535	8	3	0	5	0	0	copy fasta	PDGFC	chr4	156755454	156976799
PDGFC_chr4_156755454_156976799	0/0	t0006	3534	7	0	4	2	1	0	copy fasta	PDGFC	chr4	156755454	156976799
PDGFC_chr4_156755454_156976799	0/0	t0007	3533	5	0	0	5	0	0	copy fasta	PDGFC	chr4	156755454	156976799
PDGFC_chr4_156755454_156976799	0/0	t0008	3539	4	4	0	0	0	0	copy fasta	PDGFC	chr4	156755454	156976799
PDGFC_chr4_156755454_156976799	0/0	t0009	3534	4	4	0	0	0	0	copy fasta	PDGFC	chr4	156755454	156976799
PDGFC_chr4_156755454_156976799	0/0	t0010	3533	4	3	1	0	0	0	copy fasta	PDGFC	chr4	156755454	156976799
PDGFC_chr4_156755454_156976799	0/0	t0011	3532	3	3	0	0	0	0	copy fasta	PDGFC	chr4	156755454	156976799
PDGFC_chr4_156755454_156976799	0/0	t0012	3533	3	3	0	0	0	0	copy fasta	PDGFC	chr4	156755454	156976799
PDGFC_chr4_156755454_156976799	0/0	t0013	3532	2	0	0	0	1	1	copy fasta	PDGFC	chr4	156755454	156976799