Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ACADM_chr1_75719709_75768679	0/0	t0003	996	24	0	13	3	1	7	copy fasta	ACADM	chr1	75719709	75768679
ACADM_chr1_75719709_75768679	0/0	t0004	996	11	3	4	2	1	1	copy fasta	ACADM	chr1	75719709	75768679
ACADM_chr1_75719709_75768679	0/0	t0005	996	10	9	1	0	0	0	copy fasta	ACADM	chr1	75719709	75768679
ACADM_chr1_75719709_75768679	0/0	t0006	996	5	0	4	0	0	1	copy fasta	ACADM	chr1	75719709	75768679
ACADM_chr1_75719709_75768679	0/0	t0007	996	2	2	0	0	0	0	copy fasta	ACADM	chr1	75719709	75768679
ACADM_chr1_75719709_75768679	0/0	t0008	996	1	1	0	0	0	0	copy fasta	ACADM	chr1	75719709	75768679
ACADM_chr1_75719709_75768679	0/0	t0009	996	1	0	0	0	0	1	copy fasta	ACADM	chr1	75719709	75768679
ACADM_chr1_75719709_75768679	0/0	t0010	996	1	0	0	1	0	0	copy fasta	ACADM	chr1	75719709	75768679
ACADSB_chr10_123004006_123063290	0/0	t0001	4550	106	18	21	50	4	13	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	t0002	4550	47	9	9	18	2	9	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	t0003	4550	42	5	6	27	0	4	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	1/0	t0004	4550	39	0	4	33	0	1	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	t0005	4550	29	15	6	0	0	8	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/1	t0006	4550	12	1	5	0	3	2	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	t0007	4550	11	0	1	9	0	1	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	t0008	4550	8	5	0	2	0	1	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	t0009	4550	7	7	0	0	0	0	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	t0010	4550	6	0	0	6	0	0	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	t0011	4550	4	4	0	0	0	0	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	t0012	4550	4	0	0	4	0	0	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	t0013	4550	3	2	1	0	0	0	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	t0014	4550	3	0	2	0	0	1	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	t0015	4550	3	2	1	0	0	0	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	t0016	4560	3	3	0	0	0	0	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	t0017	4550	2	0	2	0	0	0	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	t0018	4550	2	2	0	0	0	0	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	t0019	4550	2	0	1	0	0	1	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	t0020	4550	2	2	0	0	0	0	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	t0021	4550	2	0	0	2	0	0	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	t0022	4550	2	0	0	2	0	0	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	t0023	4550	2	0	2	0	0	0	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	t0024	4550	1	0	1	0	0	0	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	t0025	4550	1	0	1	0	0	0	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	t0026	4550	1	0	1	0	0	0	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	t0027	4550	1	1	0	0	0	0	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	t0028	4550	1	0	1	0	0	0	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	t0029	4550	1	1	0	0	0	0	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	t0030	4550	1	1	0	0	0	0	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	t0031	4550	1	1	0	0	0	0	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	t0032	4550	1	1	0	0	0	0	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	t0033	4550	1	1	0	0	0	0	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	t0034	4550	1	0	1	0	0	0	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	t0035	4550	1	1	0	0	0	0	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	t0036	4550	1	1	0	0	0	0	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	t0037	4550	1	1	0	0	0	0	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	t0038	4550	1	0	0	0	0	1	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	t0039	4550	1	0	0	1	0	0	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	t0040	4550	1	1	0	0	0	0	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	t0041	4550	1	1	0	0	0	0	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	t0042	4567	1	0	0	1	0	0	copy fasta	ACADSB	chr10	123004006	123063290