JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATAD3C_chr1_1444689_1475163	0/0	t0066	2624	1	1	0	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0067	2628	1	0	1	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0068	2627	1	0	0	0	0	1	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0069	2633	1	0	1	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0070	2615	1	1	0	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0071	2630	1	0	0	1	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0072	2626	1	1	0	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0073	2649	1	1	0	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0074	2629	1	1	0	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0075	2632	1	1	0	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0076	2631	1	1	0	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0077	2629	1	1	0	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0078	2628	1	1	0	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0079	2625	1	1	0	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0080	2628	1	0	1	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0081	2636	1	0	0	1	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0082	2635	1	0	0	1	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0083	2634	1	0	0	1	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0084	2632	1	0	0	1	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0085	2630	1	0	0	1	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0086	2629	1	0	0	0	0	1	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0087	2627	1	0	0	1	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0088	2628	1	0	0	0	0	1	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0089	2626	1	0	0	1	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0090	2627	1	0	0	1	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0091	2624	1	1	0	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0092	2651	1	1	0	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0093	2631	1	1	0	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0094	2631	1	1	0	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0095	2627	1	1	0	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0096	2627	1	1	0	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0097	2640	1	0	1	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0098	2640	1	1	0	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0099	2630	1	1	0	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0100	2629	1	0	0	0	1	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0101	2629	1	1	0	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0102	2647	1	0	0	1	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0103	2641	1	0	0	1	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0104	2639	1	0	0	1	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0105	2638	1	0	0	1	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0106	2639	1	0	0	1	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0107	2637	1	0	0	1	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0108	2636	1	0	0	1	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0109	2636	1	0	1	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0110	2624	1	0	0	0	0	1	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0111	2625	1	0	0	0	0	1	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0112	2624	1	0	1	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0113	2630	1	1	0	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0114	2624	1	1	0	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0115	2636	1	0	0	1	0	0	copy fasta	ATAD3C	chr1	1444689	1475163