JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PDGFC_chr4_156755454_156976799	0/0	t0014	3533	2	0	2	0	0	0	copy fasta	PDGFC	chr4	156755454	156976799
PDGFC_chr4_156755454_156976799	0/0	t0015	3535	2	0	1	1	0	0	copy fasta	PDGFC	chr4	156755454	156976799
PDGFC_chr4_156755454_156976799	0/0	t0016	3534	2	2	0	0	0	0	copy fasta	PDGFC	chr4	156755454	156976799
PDGFC_chr4_156755454_156976799	0/0	t0017	3533	1	0	0	1	0	0	copy fasta	PDGFC	chr4	156755454	156976799
PDGFC_chr4_156755454_156976799	0/0	t0018	3533	1	0	1	0	0	0	copy fasta	PDGFC	chr4	156755454	156976799
PDGFC_chr4_156755454_156976799	0/0	t0019	3533	1	0	1	0	0	0	copy fasta	PDGFC	chr4	156755454	156976799
PDGFC_chr4_156755454_156976799	0/0	t0020	3532	1	1	0	0	0	0	copy fasta	PDGFC	chr4	156755454	156976799
PDGFC_chr4_156755454_156976799	0/0	t0021	3535	1	1	0	0	0	0	copy fasta	PDGFC	chr4	156755454	156976799
PDGFC_chr4_156755454_156976799	0/0	t0022	3532	1	1	0	0	0	0	copy fasta	PDGFC	chr4	156755454	156976799
PDGFC_chr4_156755454_156976799	0/0	t0023	3533	1	1	0	0	0	0	copy fasta	PDGFC	chr4	156755454	156976799
PDGFC_chr4_156755454_156976799	0/0	t0024	3533	1	1	0	0	0	0	copy fasta	PDGFC	chr4	156755454	156976799
PDGFC_chr4_156755454_156976799	0/0	t0025	3531	1	0	0	0	0	1	copy fasta	PDGFC	chr4	156755454	156976799
PDGFC_chr4_156755454_156976799	0/0	t0026	3533	1	1	0	0	0	0	copy fasta	PDGFC	chr4	156755454	156976799
PDGFC_chr4_156755454_156976799	0/0	t0027	3533	1	0	0	0	0	1	copy fasta	PDGFC	chr4	156755454	156976799
PDGFC_chr4_156755454_156976799	0/0	t0028	3533	1	0	0	1	0	0	copy fasta	PDGFC	chr4	156755454	156976799
PDGFC_chr4_156755454_156976799	0/0	t0029	3532	1	1	0	0	0	0	copy fasta	PDGFC	chr4	156755454	156976799
PDGFC_chr4_156755454_156976799	0/0	t0030	3536	1	0	0	1	0	0	copy fasta	PDGFC	chr4	156755454	156976799
PDGFC_chr4_156755454_156976799	0/0	t0031	3534	1	0	0	0	0	1	copy fasta	PDGFC	chr4	156755454	156976799
PDGFC_chr4_156755454_156976799	0/0	t0032	3533	1	1	0	0	0	0	copy fasta	PDGFC	chr4	156755454	156976799
PDGFC_chr4_156755454_156976799	0/0	t0033	3533	1	0	0	1	0	0	copy fasta	PDGFC	chr4	156755454	156976799
PDGFC_chr4_156755454_156976799	0/0	t0034	3535	1	0	0	1	0	0	copy fasta	PDGFC	chr4	156755454	156976799
PDGFD_chr11_103902189_104169147	0/1	t0001	2729	66	16	11	30	3	5	copy fasta	PDGFD	chr11	103902189	104169147
PDGFD_chr11_103902189_104169147	1/0	t0002	2726	57	14	9	27	0	6	copy fasta	PDGFD	chr11	103902189	104169147
PDGFD_chr11_103902189_104169147	0/0	t0003	2726	29	8	2	19	0	0	copy fasta	PDGFD	chr11	103902189	104169147
PDGFD_chr11_103902189_104169147	0/0	t0004	2730	11	5	1	1	0	4	copy fasta	PDGFD	chr11	103902189	104169147
PDGFD_chr11_103902189_104169147	0/0	t0005	2728	7	7	0	0	0	0	copy fasta	PDGFD	chr11	103902189	104169147
PDGFD_chr11_103902189_104169147	0/0	t0006	2728	4	0	4	0	0	0	copy fasta	PDGFD	chr11	103902189	104169147
PDGFD_chr11_103902189_104169147	0/0	t0007	2726	3	2	1	0	0	0	copy fasta	PDGFD	chr11	103902189	104169147
PDGFD_chr11_103902189_104169147	0/0	t0008	2728	3	1	0	0	0	2	copy fasta	PDGFD	chr11	103902189	104169147
PDGFD_chr11_103902189_104169147	0/0	t0009	2728	3	2	1	0	0	0	copy fasta	PDGFD	chr11	103902189	104169147
PDGFD_chr11_103902189_104169147	0/0	t0010	2725	2	2	0	0	0	0	copy fasta	PDGFD	chr11	103902189	104169147
PDGFD_chr11_103902189_104169147	0/0	t0011	2726	2	0	2	0	0	0	copy fasta	PDGFD	chr11	103902189	104169147
PDGFD_chr11_103902189_104169147	0/0	t0012	2729	2	2	0	0	0	0	copy fasta	PDGFD	chr11	103902189	104169147
PDGFD_chr11_103902189_104169147	0/0	t0013	2730	2	2	0	0	0	0	copy fasta	PDGFD	chr11	103902189	104169147
PDGFD_chr11_103902189_104169147	0/0	t0014	2730	2	2	0	0	0	0	copy fasta	PDGFD	chr11	103902189	104169147
PDGFD_chr11_103902189_104169147	0/0	t0015	2726	1	0	0	1	0	0	copy fasta	PDGFD	chr11	103902189	104169147
PDGFD_chr11_103902189_104169147	0/0	t0016	2726	1	0	0	0	1	0	copy fasta	PDGFD	chr11	103902189	104169147
PDGFD_chr11_103902189_104169147	0/0	t0017	2726	1	1	0	0	0	0	copy fasta	PDGFD	chr11	103902189	104169147
PDGFD_chr11_103902189_104169147	0/0	t0018	2728	1	0	0	0	0	1	copy fasta	PDGFD	chr11	103902189	104169147
PDGFD_chr11_103902189_104169147	0/0	t0019	2726	1	1	0	0	0	0	copy fasta	PDGFD	chr11	103902189	104169147
PDGFD_chr11_103902189_104169147	0/0	t0020	2726	1	0	1	0	0	0	copy fasta	PDGFD	chr11	103902189	104169147
PDGFD_chr11_103902189_104169147	0/0	t0021	2728	1	1	0	0	0	0	copy fasta	PDGFD	chr11	103902189	104169147
PDGFRA_chr4_54224293_54303245	0/1	t0001	3107	131	25	29	63	4	9	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRA_chr4_54224293_54303245	0/0	t0002	3106	73	22	11	30	5	5	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRA_chr4_54224293_54303245	0/0	t0003	3108	18	14	2	1	0	1	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRA_chr4_54224293_54303245	0/0	t0004	3106	17	0	4	2	4	7	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRA_chr4_54224293_54303245	0/0	t0005	3105	11	7	1	1	0	2	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRA_chr4_54224293_54303245	0/0	t0006	3104	8	0	5	2	0	1	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRA_chr4_54224293_54303245	0/0	t0007	3108	7	5	1	1	0	0	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRA_chr4_54224293_54303245	0/0	t0008	3106	5	5	0	0	0	0	copy fasta	PDGFRA	chr4	54224293	54303245