JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PDGFRA_chr4_54224293_54303245	0/0	t0009	3106	3	0	2	0	0	1	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRA_chr4_54224293_54303245	0/0	t0010	3107	3	0	3	0	0	0	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRA_chr4_54224293_54303245	0/0	t0011	3105	3	0	2	0	1	0	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRA_chr4_54224293_54303245	0/0	t0012	3107	2	0	0	0	0	2	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRA_chr4_54224293_54303245	1/0	t0013	3109	2	1	0	0	0	0	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRA_chr4_54224293_54303245	0/0	t0014	3108	2	1	1	0	0	0	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRA_chr4_54224293_54303245	0/0	t0015	3109	2	2	0	0	0	0	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRA_chr4_54224293_54303245	0/0	t0016	3106	2	0	0	0	0	2	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRA_chr4_54224293_54303245	0/0	t0017	3106	2	0	0	2	0	0	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRA_chr4_54224293_54303245	0/0	t0018	3107	1	0	0	1	0	0	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRA_chr4_54224293_54303245	0/0	t0019	3108	1	1	0	0	0	0	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRA_chr4_54224293_54303245	0/0	t0020	3107	1	0	0	1	0	0	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRA_chr4_54224293_54303245	0/0	t0021	3107	1	0	0	1	0	0	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRA_chr4_54224293_54303245	0/0	t0022	3106	1	1	0	0	0	0	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRA_chr4_54224293_54303245	0/0	t0023	3105	1	0	1	0	0	0	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRA_chr4_54224293_54303245	0/0	t0024	3107	1	1	0	0	0	0	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRA_chr4_54224293_54303245	0/0	t0025	3105	1	1	0	0	0	0	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRA_chr4_54224293_54303245	0/0	t0026	3106	1	0	0	1	0	0	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRB_chr5_150108839_150160845	0/0	t0001	2380	192	29	25	110	5	23	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	t0002	2379	43	4	1	36	0	2	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/1	t0003	2380	37	10	10	6	4	6	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	t0004	2380	26	0	6	20	0	0	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	t0005	2380	16	0	4	10	0	2	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	t0006	2380	15	5	7	2	0	1	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	t0007	2380	11	10	1	0	0	0	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	t0008	2380	11	10	1	0	0	0	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	t0009	2380	10	6	1	0	2	1	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	t0010	2380	9	0	3	0	5	1	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	t0011	2380	8	0	1	4	0	3	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	t0012	2379	7	0	0	7	0	0	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	t0013	2380	6	6	0	0	0	0	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	t0014	2380	3	3	0	0	0	0	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	t0015	2380	3	2	1	0	0	0	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	t0016	2380	2	0	0	2	0	0	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	t0017	2380	2	0	0	2	0	0	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	t0018	2380	2	0	2	0	0	0	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	t0019	2380	1	0	1	0	0	0	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	t0020	2380	1	1	0	0	0	0	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	t0021	2380	1	0	0	0	0	1	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	1/0	t0022	2380	1	0	0	0	0	0	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	t0023	2379	1	0	0	1	0	0	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	t0024	2380	1	1	0	0	0	0	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	t0025	2380	1	0	0	1	0	0	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	t0026	2380	1	0	1	0	0	0	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	t0027	2380	1	0	0	1	0	0	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	t0028	2380	1	0	1	0	0	0	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	t0029	2380	1	0	0	0	0	1	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	t0030	2380	1	1	0	0	0	0	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	t0031	2379	1	0	0	1	0	0	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	t0032	2380	1	0	0	0	0	1	copy fasta	PDGFRB	chr5	150108839	150160845