JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PDGFRB_chr5_150108839_150160845	0/0	t0033	2380	1	0	0	1	0	0	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRL_chr8_17572216_17648144	1/1	t0001	381	389	98	74	164	6	45	copy fasta	PDGFRL	chr8	17572216	17648144
PDGFRL_chr8_17572216_17648144	0/0	t0002	376	4	0	2	0	1	1	copy fasta	PDGFRL	chr8	17572216	17648144
PDGFRL_chr8_17572216_17648144	0/0	t0003	381	2	2	0	0	0	0	copy fasta	PDGFRL	chr8	17572216	17648144
PDGFRL_chr8_17572216_17648144	0/0	t0004	381	1	0	0	0	1	0	copy fasta	PDGFRL	chr8	17572216	17648144
PDGFRL_chr8_17572216_17648144	0/0	t0005	381	1	0	0	1	0	0	copy fasta	PDGFRL	chr8	17572216	17648144
PDGFRL_chr8_17572216_17648144	0/0	t0006	381	1	0	1	0	0	0	copy fasta	PDGFRL	chr8	17572216	17648144
PDGFRL_chr8_17572216_17648144	0/0	t0007	381	1	0	0	1	0	0	copy fasta	PDGFRL	chr8	17572216	17648144
PDGFRL_chr8_17572216_17648144	0/0	t0008	381	1	0	1	0	0	0	copy fasta	PDGFRL	chr8	17572216	17648144
PDHA1_chrX_19338927_19366718	1/1	t0001	2177	161	16	28	89	4	22	copy fasta	PDHA1	chrX	19338927	19366718
PDHA1_chrX_19338927_19366718	0/0	t0002	2180	24	23	1	0	0	0	copy fasta	PDHA1	chrX	19338927	19366718
PDHA1_chrX_19338927_19366718	0/0	t0003	2180	16	8	2	2	0	4	copy fasta	PDHA1	chrX	19338927	19366718
PDHA1_chrX_19338927_19366718	0/0	t0004	2167	15	10	5	0	0	0	copy fasta	PDHA1	chrX	19338927	19366718
PDHA1_chrX_19338927_19366718	0/0	t0005	2180	8	7	1	0	0	0	copy fasta	PDHA1	chrX	19338927	19366718
PDHA1_chrX_19338927_19366718	0/0	t0006	2173	4	3	1	0	0	0	copy fasta	PDHA1	chrX	19338927	19366718
PDHA1_chrX_19338927_19366718	0/0	t0007	2180	3	3	0	0	0	0	copy fasta	PDHA1	chrX	19338927	19366718
PDHA1_chrX_19338927_19366718	0/0	t0008	2177	2	0	0	2	0	0	copy fasta	PDHA1	chrX	19338927	19366718
PDHA1_chrX_19338927_19366718	0/0	t0009	2177	2	0	1	0	1	0	copy fasta	PDHA1	chrX	19338927	19366718
PDHA1_chrX_19338927_19366718	0/0	t0010	2180	2	2	0	0	0	0	copy fasta	PDHA1	chrX	19338927	19366718
PDHA1_chrX_19338927_19366718	0/0	t0011	2180	1	1	0	0	0	0	copy fasta	PDHA1	chrX	19338927	19366718
PDHA1_chrX_19338927_19366718	0/0	t0012	2177	1	0	0	0	0	1	copy fasta	PDHA1	chrX	19338927	19366718
PDHA1_chrX_19338927_19366718	0/0	t0013	2177	1	0	0	1	0	0	copy fasta	PDHA1	chrX	19338927	19366718
PDHA1_chrX_19338927_19366718	0/0	t0014	2177	1	0	0	0	0	1	copy fasta	PDHA1	chrX	19338927	19366718
PDHA1_chrX_19338927_19366718	0/0	t0015	2177	1	1	0	0	0	0	copy fasta	PDHA1	chrX	19338927	19366718
PDHA1_chrX_19338927_19366718	0/0	t0016	2177	1	0	1	0	0	0	copy fasta	PDHA1	chrX	19338927	19366718
PDHA1_chrX_19338927_19366718	0/0	t0017	2177	1	0	0	1	0	0	copy fasta	PDHA1	chrX	19338927	19366718
PDHA1_chrX_19338927_19366718	0/0	t0018	2169	1	1	0	0	0	0	copy fasta	PDHA1	chrX	19338927	19366718
PDHA1_chrX_19338927_19366718	0/0	t0019	2167	1	1	0	0	0	0	copy fasta	PDHA1	chrX	19338927	19366718
PDHA1_chrX_19338927_19366718	0/0	t0020	2177	1	0	1	0	0	0	copy fasta	PDHA1	chrX	19338927	19366718
PDHA2_chr4_95835093_95846464	1/0	t0001	206	404	90	69	186	15	43	copy fasta	PDHA2	chr4	95835093	95846464
PDHA2_chr4_95835093_95846464	0/1	t0002	206	17	2	10	0	1	3	copy fasta	PDHA2	chr4	95835093	95846464
PDHA2_chr4_95835093_95846464	0/0	t0003	206	2	0	0	2	0	0	copy fasta	PDHA2	chr4	95835093	95846464
PDHA2_chr4_95835093_95846464	0/0	t0004	206	1	0	1	0	0	0	copy fasta	PDHA2	chr4	95835093	95846464
PDHB_chr3_58422630_58438832	0/0	t0001	428	133	4	25	81	3	20	copy fasta	PDHB	chr3	58422630	58438832
PDHB_chr3_58422630_58438832	1/0	t0002	428	119	40	23	41	4	10	copy fasta	PDHB	chr3	58422630	58438832
PDHB_chr3_58422630_58438832	0/1	t0003	428	50	19	20	0	1	9	copy fasta	PDHB	chr3	58422630	58438832
PDHB_chr3_58422630_58438832	0/0	t0004	428	45	27	9	2	4	3	copy fasta	PDHB	chr3	58422630	58438832
PDHB_chr3_58422630_58438832	0/0	t0005	428	7	7	0	0	0	0	copy fasta	PDHB	chr3	58422630	58438832
PDHB_chr3_58422630_58438832	0/0	t0006	428	2	0	0	0	0	2	copy fasta	PDHB	chr3	58422630	58438832
PDHB_chr3_58422630_58438832	0/0	t0007	428	1	1	0	0	0	0	copy fasta	PDHB	chr3	58422630	58438832
PDHB_chr3_58422630_58438832	0/0	t0008	428	1	0	0	1	0	0	copy fasta	PDHB	chr3	58422630	58438832
PDHB_chr3_58422630_58438832	0/0	t0009	428	1	0	1	0	0	0	copy fasta	PDHB	chr3	58422630	58438832
PDHB_chr3_58422630_58438832	0/0	t0010	428	1	0	0	1	0	0	copy fasta	PDHB	chr3	58422630	58438832
PDHX_chr11_34911618_35001128	0/0	t0001	995	134	23	31	56	6	18	copy fasta	PDHX	chr11	34911618	35001128
PDHX_chr11_34911618_35001128	1/0	t0002	995	81	17	17	33	3	10	copy fasta	PDHX	chr11	34911618	35001128
PDHX_chr11_34911618_35001128	0/0	t0003	995	30	8	6	14	1	1	copy fasta	PDHX	chr11	34911618	35001128
PDHX_chr11_34911618_35001128	0/1	t0004	995	23	12	2	2	0	6	copy fasta	PDHX	chr11	34911618	35001128
PDHX_chr11_34911618_35001128	0/0	t0005	995	14	14	0	0	0	0	copy fasta	PDHX	chr11	34911618	35001128
PDHX_chr11_34911618_35001128	0/0	t0006	995	8	8	0	0	0	0	copy fasta	PDHX	chr11	34911618	35001128
PDHX_chr11_34911618_35001128	0/0	t0007	995	6	6	0	0	0	0	copy fasta	PDHX	chr11	34911618	35001128