JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PDHX_chr11_34911618_35001128	0/0	t0008	995	4	0	0	4	0	0	copy fasta	PDHX	chr11	34911618	35001128
PDHX_chr11_34911618_35001128	0/0	t0009	995	3	1	2	0	0	0	copy fasta	PDHX	chr11	34911618	35001128
PDHX_chr11_34911618_35001128	0/0	t0010	995	3	0	0	3	0	0	copy fasta	PDHX	chr11	34911618	35001128
PDHX_chr11_34911618_35001128	0/0	t0011	991	2	0	1	0	0	1	copy fasta	PDHX	chr11	34911618	35001128
PDHX_chr11_34911618_35001128	0/0	t0012	995	2	0	0	2	0	0	copy fasta	PDHX	chr11	34911618	35001128
PDHX_chr11_34911618_35001128	0/0	t0013	995	1	1	0	0	0	0	copy fasta	PDHX	chr11	34911618	35001128
PDHX_chr11_34911618_35001128	0/0	t0014	945	1	1	0	0	0	0	copy fasta	PDHX	chr11	34911618	35001128
PDHX_chr11_34911618_35001128	0/0	t0015	991	1	0	1	0	0	0	copy fasta	PDHX	chr11	34911618	35001128
PDHX_chr11_34911618_35001128	0/0	t0016	995	1	1	0	0	0	0	copy fasta	PDHX	chr11	34911618	35001128
PDIA2_chr16_278164_292215	1/1	t0001	109	428	94	83	183	17	49	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	t0002	109	6	4	1	1	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	t0003	109	1	0	0	0	1	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	t0004	120	1	0	0	0	0	1	copy fasta	PDIA2	chr16	278164	292215
PDIA3_chr15_43741438_43778278	0/1	t0001	2163	158	13	25	90	7	22	copy fasta	PDIA3	chr15	43741438	43778278
PDIA3_chr15_43741438_43778278	1/0	t0002	2163	86	44	8	22	4	7	copy fasta	PDIA3	chr15	43741438	43778278
PDIA3_chr15_43741438_43778278	0/0	t0003	2163	82	21	10	45	1	5	copy fasta	PDIA3	chr15	43741438	43778278
PDIA3_chr15_43741438_43778278	0/0	t0004	2163	7	7	0	0	0	0	copy fasta	PDIA3	chr15	43741438	43778278
PDIA3_chr15_43741438_43778278	0/0	t0005	2163	6	0	0	6	0	0	copy fasta	PDIA3	chr15	43741438	43778278
PDIA3_chr15_43741438_43778278	0/0	t0006	2163	5	4	1	0	0	0	copy fasta	PDIA3	chr15	43741438	43778278
PDIA3_chr15_43741438_43778278	0/0	t0007	2163	4	0	0	4	0	0	copy fasta	PDIA3	chr15	43741438	43778278
PDIA3_chr15_43741438_43778278	0/0	t0008	2163	2	2	0	0	0	0	copy fasta	PDIA3	chr15	43741438	43778278
PDIA3_chr15_43741438_43778278	0/0	t0009	2163	2	0	0	2	0	0	copy fasta	PDIA3	chr15	43741438	43778278
PDIA3_chr15_43741438_43778278	0/0	t0010	2163	1	1	0	0	0	0	copy fasta	PDIA3	chr15	43741438	43778278
PDIA3_chr15_43741438_43778278	0/0	t0011	2163	1	0	0	1	0	0	copy fasta	PDIA3	chr15	43741438	43778278
PDIA3_chr15_43741438_43778278	0/0	t0012	2163	1	0	1	0	0	0	copy fasta	PDIA3	chr15	43741438	43778278
PDIA3_chr15_43741438_43778278	0/0	t0013	2163	1	0	0	0	0	1	copy fasta	PDIA3	chr15	43741438	43778278
PDIA3_chr15_43741438_43778278	0/0	t0014	2163	1	0	0	0	0	1	copy fasta	PDIA3	chr15	43741438	43778278
PDIA3_chr15_43741438_43778278	0/0	t0015	2163	1	0	1	0	0	0	copy fasta	PDIA3	chr15	43741438	43778278
PDIA4_chr7_148998062_149033505	1/1	t0001	830	243	38	43	129	9	22	copy fasta	PDIA4	chr7	148998062	149033505
PDIA4_chr7_148998062_149033505	0/0	t0002	830	51	23	14	0	3	11	copy fasta	PDIA4	chr7	148998062	149033505
PDIA4_chr7_148998062_149033505	0/0	t0003	830	16	7	0	9	0	0	copy fasta	PDIA4	chr7	148998062	149033505
PDIA4_chr7_148998062_149033505	0/0	t0004	830	8	7	1	0	0	0	copy fasta	PDIA4	chr7	148998062	149033505
PDIA4_chr7_148998062_149033505	0/0	t0005	829	6	6	0	0	0	0	copy fasta	PDIA4	chr7	148998062	149033505
PDIA4_chr7_148998062_149033505	0/0	t0006	831	6	6	0	0	0	0	copy fasta	PDIA4	chr7	148998062	149033505
PDIA4_chr7_148998062_149033505	0/0	t0007	829	4	0	1	3	0	0	copy fasta	PDIA4	chr7	148998062	149033505
PDIA4_chr7_148998062_149033505	0/0	t0008	830	2	2	0	0	0	0	copy fasta	PDIA4	chr7	148998062	149033505
PDIA4_chr7_148998062_149033505	0/0	t0009	830	2	2	0	0	0	0	copy fasta	PDIA4	chr7	148998062	149033505
PDIA4_chr7_148998062_149033505	0/0	t0010	830	2	0	2	0	0	0	copy fasta	PDIA4	chr7	148998062	149033505
PDIA4_chr7_148998062_149033505	0/0	t0011	829	1	1	0	0	0	0	copy fasta	PDIA4	chr7	148998062	149033505
PDIA4_chr7_148998062_149033505	0/0	t0012	830	1	1	0	0	0	0	copy fasta	PDIA4	chr7	148998062	149033505
PDIA4_chr7_148998062_149033505	0/0	t0013	831	1	1	0	0	0	0	copy fasta	PDIA4	chr7	148998062	149033505
PDIA4_chr7_148998062_149033505	0/0	t0014	830	1	0	0	0	0	1	copy fasta	PDIA4	chr7	148998062	149033505
PDIA4_chr7_148998062_149033505	0/0	t0015	829	1	1	0	0	0	0	copy fasta	PDIA4	chr7	148998062	149033505
PDIA4_chr7_148998062_149033505	0/0	t0016	830	1	1	0	0	0	0	copy fasta	PDIA4	chr7	148998062	149033505
PDIA4_chr7_148998062_149033505	0/0	t0017	830	1	1	0	0	0	0	copy fasta	PDIA4	chr7	148998062	149033505
PDIA4_chr7_148998062_149033505	0/0	t0018	830	1	1	0	0	0	0	copy fasta	PDIA4	chr7	148998062	149033505
PDIA4_chr7_148998062_149033505	0/0	t0019	831	1	0	0	1	0	0	copy fasta	PDIA4	chr7	148998062	149033505
PDIA4_chr7_148998062_149033505	0/0	t0020	830	1	0	0	1	0	0	copy fasta	PDIA4	chr7	148998062	149033505
PDIA4_chr7_148998062_149033505	0/0	t0021	829	1	0	0	1	0	0	copy fasta	PDIA4	chr7	148998062	149033505
PDIA4_chr7_148998062_149033505	0/0	t0022	830	1	0	1	0	0	0	copy fasta	PDIA4	chr7	148998062	149033505