JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PDK4_chr7_95578499_95601516	0/0	t0007	2366	7	0	0	7	0	0	copy fasta	PDK4	chr7	95578499	95601516
PDK4_chr7_95578499_95601516	0/0	t0008	2367	7	0	4	3	0	0	copy fasta	PDK4	chr7	95578499	95601516
PDK4_chr7_95578499_95601516	0/0	t0009	2367	7	2	0	1	1	3	copy fasta	PDK4	chr7	95578499	95601516
PDK4_chr7_95578499_95601516	0/0	t0010	2365	6	6	0	0	0	0	copy fasta	PDK4	chr7	95578499	95601516
PDK4_chr7_95578499_95601516	0/0	t0011	2368	6	5	1	0	0	0	copy fasta	PDK4	chr7	95578499	95601516
PDK4_chr7_95578499_95601516	0/0	t0012	2368	5	2	0	1	0	2	copy fasta	PDK4	chr7	95578499	95601516
PDK4_chr7_95578499_95601516	0/0	t0013	2367	5	5	0	0	0	0	copy fasta	PDK4	chr7	95578499	95601516
PDK4_chr7_95578499_95601516	0/0	t0014	2366	5	5	0	0	0	0	copy fasta	PDK4	chr7	95578499	95601516
PDK4_chr7_95578499_95601516	0/0	t0015	2366	3	0	3	0	0	0	copy fasta	PDK4	chr7	95578499	95601516
PDK4_chr7_95578499_95601516	0/0	t0016	2367	3	0	0	0	0	3	copy fasta	PDK4	chr7	95578499	95601516
PDK4_chr7_95578499_95601516	0/0	t0017	2368	3	3	0	0	0	0	copy fasta	PDK4	chr7	95578499	95601516
PDK4_chr7_95578499_95601516	0/0	t0018	2368	3	2	1	0	0	0	copy fasta	PDK4	chr7	95578499	95601516
PDK4_chr7_95578499_95601516	0/0	t0019	2367	3	0	3	0	0	0	copy fasta	PDK4	chr7	95578499	95601516
PDK4_chr7_95578499_95601516	0/0	t0020	2366	2	2	0	0	0	0	copy fasta	PDK4	chr7	95578499	95601516
PDK4_chr7_95578499_95601516	0/0	t0021	2366	1	0	0	1	0	0	copy fasta	PDK4	chr7	95578499	95601516
PDK4_chr7_95578499_95601516	0/0	t0022	2366	1	0	0	1	0	0	copy fasta	PDK4	chr7	95578499	95601516
PDK4_chr7_95578499_95601516	0/0	t0023	2366	1	0	0	0	0	1	copy fasta	PDK4	chr7	95578499	95601516
PDK4_chr7_95578499_95601516	0/0	t0024	2366	1	0	0	1	0	0	copy fasta	PDK4	chr7	95578499	95601516
PDK4_chr7_95578499_95601516	0/0	t0025	2365	1	0	1	0	0	0	copy fasta	PDK4	chr7	95578499	95601516
PDK4_chr7_95578499_95601516	0/0	t0026	2365	1	1	0	0	0	0	copy fasta	PDK4	chr7	95578499	95601516
PDK4_chr7_95578499_95601516	0/0	t0027	2365	1	0	1	0	0	0	copy fasta	PDK4	chr7	95578499	95601516
PDK4_chr7_95578499_95601516	0/0	t0028	2365	1	1	0	0	0	0	copy fasta	PDK4	chr7	95578499	95601516
PDK4_chr7_95578499_95601516	0/0	t0029	2367	1	0	0	1	0	0	copy fasta	PDK4	chr7	95578499	95601516
PDK4_chr7_95578499_95601516	0/0	t0030	2367	1	1	0	0	0	0	copy fasta	PDK4	chr7	95578499	95601516
PDK4_chr7_95578499_95601516	0/0	t0031	2367	1	0	0	1	0	0	copy fasta	PDK4	chr7	95578499	95601516
PDK4_chr7_95578499_95601516	0/0	t0032	2367	1	1	0	0	0	0	copy fasta	PDK4	chr7	95578499	95601516
PDK4_chr7_95578499_95601516	0/0	t0033	2386	1	1	0	0	0	0	copy fasta	PDK4	chr7	95578499	95601516
PDK4_chr7_95578499_95601516	0/0	t0034	2368	1	1	0	0	0	0	copy fasta	PDK4	chr7	95578499	95601516
PDK4_chr7_95578499_95601516	0/0	t0035	2367	1	1	0	0	0	0	copy fasta	PDK4	chr7	95578499	95601516
PDK4_chr7_95578499_95601516	0/0	t0036	2368	1	1	0	0	0	0	copy fasta	PDK4	chr7	95578499	95601516
PDK4_chr7_95578499_95601516	0/0	t0037	2367	1	0	0	1	0	0	copy fasta	PDK4	chr7	95578499	95601516
PDLIM1_chr10_95232572_95296003	1/0	t0001	442	183	51	14	96	3	18	copy fasta	PDLIM1	chr10	95232572	95296003
PDLIM1_chr10_95232572_95296003	0/0	t0002	442	59	13	16	18	4	8	copy fasta	PDLIM1	chr10	95232572	95296003
PDLIM1_chr10_95232572_95296003	0/0	t0003	442	41	9	14	2	6	10	copy fasta	PDLIM1	chr10	95232572	95296003
PDLIM1_chr10_95232572_95296003	0/0	t0004	442	25	3	14	3	3	2	copy fasta	PDLIM1	chr10	95232572	95296003
PDLIM1_chr10_95232572_95296003	0/1	t0005	442	17	0	2	4	2	8	copy fasta	PDLIM1	chr10	95232572	95296003
PDLIM1_chr10_95232572_95296003	0/0	t0006	442	3	3	0	0	0	0	copy fasta	PDLIM1	chr10	95232572	95296003
PDLIM1_chr10_95232572_95296003	0/0	t0007	442	3	1	2	0	0	0	copy fasta	PDLIM1	chr10	95232572	95296003
PDLIM1_chr10_95232572_95296003	0/0	t0008	442	2	0	0	2	0	0	copy fasta	PDLIM1	chr10	95232572	95296003
PDLIM1_chr10_95232572_95296003	0/0	t0009	442	2	0	0	0	0	2	copy fasta	PDLIM1	chr10	95232572	95296003
PDLIM1_chr10_95232572_95296003	0/0	t0010	463	1	0	1	0	0	0	copy fasta	PDLIM1	chr10	95232572	95296003
PDLIM1_chr10_95232572_95296003	0/0	t0011	442	1	0	0	1	0	0	copy fasta	PDLIM1	chr10	95232572	95296003
PDLIM1_chr10_95232572_95296003	0/0	t0012	442	1	0	1	0	0	0	copy fasta	PDLIM1	chr10	95232572	95296003
PDLIM2_chr8_22575475_22599298	1/0	t0001	519	247	59	49	106	9	23	copy fasta	PDLIM2	chr8	22575475	22599298
PDLIM2_chr8_22575475_22599298	0/1	t0002	519	127	29	23	48	7	19	copy fasta	PDLIM2	chr8	22575475	22599298
PDLIM2_chr8_22575475_22599298	0/0	t0003	519	2	0	0	2	0	0	copy fasta	PDLIM2	chr8	22575475	22599298
PDLIM2_chr8_22575475_22599298	0/0	t0004	519	2	0	2	0	0	0	copy fasta	PDLIM2	chr8	22575475	22599298
PDLIM2_chr8_22575475_22599298	0/0	t0005	519	1	1	0	0	0	0	copy fasta	PDLIM2	chr8	22575475	22599298
PDLIM2_chr8_22575475_22599298	0/0	t0006	519	1	1	0	0	0	0	copy fasta	PDLIM2	chr8	22575475	22599298
PDLIM3_chr4_185495660_185540507	0/1	t0001	1708	360	56	69	178	14	42	copy fasta	PDLIM3	chr4	185495660	185540507