JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PDLIM3_chr4_185495660_185540507	0/0	t0002	1674	10	9	1	0	0	0	copy fasta	PDLIM3	chr4	185495660	185540507
PDLIM3_chr4_185495660_185540507	1/0	t0003	1708	10	9	0	0	0	0	copy fasta	PDLIM3	chr4	185495660	185540507
PDLIM3_chr4_185495660_185540507	0/0	t0004	1712	5	5	0	0	0	0	copy fasta	PDLIM3	chr4	185495660	185540507
PDLIM3_chr4_185495660_185540507	0/0	t0005	1674	4	4	0	0	0	0	copy fasta	PDLIM3	chr4	185495660	185540507
PDLIM3_chr4_185495660_185540507	0/0	t0006	1708	3	2	1	0	0	0	copy fasta	PDLIM3	chr4	185495660	185540507
PDLIM3_chr4_185495660_185540507	0/0	t0007	1708	3	0	0	3	0	0	copy fasta	PDLIM3	chr4	185495660	185540507
PDLIM3_chr4_185495660_185540507	0/0	t0008	1708	3	3	0	0	0	0	copy fasta	PDLIM3	chr4	185495660	185540507
PDLIM3_chr4_185495660_185540507	0/0	t0009	1708	2	0	0	2	0	0	copy fasta	PDLIM3	chr4	185495660	185540507
PDLIM3_chr4_185495660_185540507	0/0	t0010	1708	2	2	0	0	0	0	copy fasta	PDLIM3	chr4	185495660	185540507
PDLIM3_chr4_185495660_185540507	0/0	t0011	1708	1	0	0	1	0	0	copy fasta	PDLIM3	chr4	185495660	185540507
PDLIM3_chr4_185495660_185540507	0/0	t0012	1712	1	1	0	0	0	0	copy fasta	PDLIM3	chr4	185495660	185540507
PDLIM3_chr4_185495660_185540507	0/0	t0013	1708	1	0	0	1	0	0	copy fasta	PDLIM3	chr4	185495660	185540507
PDLIM3_chr4_185495660_185540507	0/0	t0014	1708	1	1	0	0	0	0	copy fasta	PDLIM3	chr4	185495660	185540507
PDLIM3_chr4_185495660_185540507	0/0	t0015	1708	1	0	0	0	0	1	copy fasta	PDLIM3	chr4	185495660	185540507
PDLIM3_chr4_185495660_185540507	0/0	t0016	1708	1	0	1	0	0	0	copy fasta	PDLIM3	chr4	185495660	185540507
PDLIM3_chr4_185495660_185540507	0/0	t0017	1708	1	0	0	1	0	0	copy fasta	PDLIM3	chr4	185495660	185540507
PDLIM3_chr4_185495660_185540507	0/0	t0018	1708	1	0	0	0	0	1	copy fasta	PDLIM3	chr4	185495660	185540507
PDLIM3_chr4_185495660_185540507	0/0	t0019	1711	1	1	0	0	0	0	copy fasta	PDLIM3	chr4	185495660	185540507
PDLIM3_chr4_185495660_185540507	0/0	t0020	1708	1	1	0	0	0	0	copy fasta	PDLIM3	chr4	185495660	185540507
PDLIM4_chr5_132252696_132278454	1/1	t0001	1265	216	46	59	76	13	20	copy fasta	PDLIM4	chr5	132252696	132278454
PDLIM4_chr5_132252696_132278454	0/0	t0002	1270	141	33	14	87	1	6	copy fasta	PDLIM4	chr5	132252696	132278454
PDLIM4_chr5_132252696_132278454	0/0	t0003	1265	28	1	10	12	0	5	copy fasta	PDLIM4	chr5	132252696	132278454
PDLIM4_chr5_132252696_132278454	0/0	t0004	1270	6	5	1	0	0	0	copy fasta	PDLIM4	chr5	132252696	132278454
PDLIM4_chr5_132252696_132278454	0/0	t0005	1270	5	5	0	0	0	0	copy fasta	PDLIM4	chr5	132252696	132278454
PDLIM4_chr5_132252696_132278454	0/0	t0006	1265	4	4	0	0	0	0	copy fasta	PDLIM4	chr5	132252696	132278454
PDLIM4_chr5_132252696_132278454	0/0	t0007	1270	3	3	0	0	0	0	copy fasta	PDLIM4	chr5	132252696	132278454
PDLIM4_chr5_132252696_132278454	0/0	t0008	1270	2	2	0	0	0	0	copy fasta	PDLIM4	chr5	132252696	132278454
PDLIM4_chr5_132252696_132278454	0/0	t0009	1270	1	0	0	0	0	1	copy fasta	PDLIM4	chr5	132252696	132278454
PDLIM4_chr5_132252696_132278454	0/0	t0010	1270	1	0	0	1	0	0	copy fasta	PDLIM4	chr5	132252696	132278454
PDLIM4_chr5_132252696_132278454	0/0	t0011	1265	1	0	0	1	0	0	copy fasta	PDLIM4	chr5	132252696	132278454
PDLIM4_chr5_132252696_132278454	0/0	t0012	1265	1	0	0	1	0	0	copy fasta	PDLIM4	chr5	132252696	132278454
PDLIM4_chr5_132252696_132278454	0/0	t0013	1270	1	1	0	0	0	0	copy fasta	PDLIM4	chr5	132252696	132278454
PDLIM5_chr4_94446942_94673223	0/0	t0001	4252	45	5	9	21	3	7	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	0/0	t0002	4248	36	14	11	8	1	2	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	0/0	t0003	4246	24	3	4	10	7	0	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	0/0	t0004	4251	15	0	3	11	0	1	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	0/0	t0005	4239	14	12	2	0	0	0	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	0/0	t0006	4243	10	1	2	6	0	1	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	0/0	t0007	4250	8	8	0	0	0	0	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	0/0	t0008	4249	6	1	1	2	1	1	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	0/0	t0009	4250	5	5	0	0	0	0	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	1/0	t0010	4253	5	1	1	0	0	2	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	0/0	t0011	4251	5	0	2	1	2	0	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	0/0	t0012	4247	4	0	0	3	0	1	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	0/1	t0013	4243	4	0	0	0	0	3	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	0/0	t0014	4246	3	2	1	0	0	0	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	0/0	t0015	4245	3	0	0	3	0	0	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	0/0	t0016	4253	3	2	1	0	0	0	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	0/0	t0017	4252	3	3	0	0	0	0	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	0/0	t0018	4243	2	2	0	0	0	0	copy fasta	PDLIM5	chr4	94446942	94673223