JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PDLIM5_chr4_94446942_94673223	0/0	t0019	4252	2	2	0	0	0	0	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	0/0	t0020	4248	2	2	0	0	0	0	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	0/0	t0021	4251	1	1	0	0	0	0	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	0/0	t0022	4250	1	1	0	0	0	0	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	0/0	t0023	4246	1	0	1	0	0	0	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	0/0	t0024	4251	1	0	0	1	0	0	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	0/0	t0025	4246	1	0	0	1	0	0	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	0/0	t0026	4246	1	1	0	0	0	0	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	0/0	t0027	4245	1	0	0	1	0	0	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	0/0	t0028	4250	1	1	0	0	0	0	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	0/0	t0029	4251	1	0	0	1	0	0	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	0/0	t0030	4253	1	1	0	0	0	0	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	0/0	t0031	4252	1	0	0	0	0	1	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	0/0	t0032	4252	1	0	0	1	0	0	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	0/0	t0033	4252	1	1	0	0	0	0	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	0/0	t0034	4251	1	1	0	0	0	0	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	0/0	t0035	4246	1	0	0	1	0	0	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	0/0	t0036	4249	1	1	0	0	0	0	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	0/0	t0037	4248	1	0	0	0	0	1	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	0/0	t0038	4250	1	0	0	1	0	0	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	0/0	t0039	4249	1	1	0	0	0	0	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM7_chr5_177478394_177502604	1/1	t0001	339	422	82	83	191	18	46	copy fasta	PDLIM7	chr5	177478394	177502604
PDLIM7_chr5_177478394_177502604	0/0	t0002	339	11	11	0	0	0	0	copy fasta	PDLIM7	chr5	177478394	177502604
PDLIM7_chr5_177478394_177502604	0/0	t0003	339	3	3	0	0	0	0	copy fasta	PDLIM7	chr5	177478394	177502604
PDLIM7_chr5_177478394_177502604	0/0	t0004	339	2	2	0	0	0	0	copy fasta	PDLIM7	chr5	177478394	177502604
PDLIM7_chr5_177478394_177502604	0/0	t0005	339	1	0	1	0	0	0	copy fasta	PDLIM7	chr5	177478394	177502604
PDLIM7_chr5_177478394_177502604	0/0	t0006	339	1	0	0	1	0	0	copy fasta	PDLIM7	chr5	177478394	177502604
PDP1_chr8_93911923_93931068	0/0	t0001	2597	166	25	30	90	4	17	copy fasta	PDP1	chr8	93911923	93931068
PDP1_chr8_93911923_93931068	1/1	t0002	2597	147	22	30	64	12	17	copy fasta	PDP1	chr8	93911923	93931068
PDP1_chr8_93911923_93931068	0/0	t0003	2597	21	21	0	0	0	0	copy fasta	PDP1	chr8	93911923	93931068
PDP1_chr8_93911923_93931068	0/0	t0004	2596	16	3	1	12	0	0	copy fasta	PDP1	chr8	93911923	93931068
PDP1_chr8_93911923_93931068	0/0	t0005	2597	6	5	1	0	0	0	copy fasta	PDP1	chr8	93911923	93931068
PDP1_chr8_93911923_93931068	0/0	t0006	2596	4	4	0	0	0	0	copy fasta	PDP1	chr8	93911923	93931068
PDP1_chr8_93911923_93931068	0/0	t0007	2596	4	4	0	0	0	0	copy fasta	PDP1	chr8	93911923	93931068
PDP1_chr8_93911923_93931068	0/0	t0008	2597	3	0	0	3	0	0	copy fasta	PDP1	chr8	93911923	93931068
PDP1_chr8_93911923_93931068	0/0	t0009	2597	3	3	0	0	0	0	copy fasta	PDP1	chr8	93911923	93931068
PDP1_chr8_93911923_93931068	0/0	t0010	2597	2	0	2	0	0	0	copy fasta	PDP1	chr8	93911923	93931068
PDP1_chr8_93911923_93931068	0/0	t0011	2597	2	2	0	0	0	0	copy fasta	PDP1	chr8	93911923	93931068
PDP1_chr8_93911923_93931068	0/0	t0012	2597	2	2	0	0	0	0	copy fasta	PDP1	chr8	93911923	93931068
PDP1_chr8_93911923_93931068	0/0	t0013	2596	2	2	0	0	0	0	copy fasta	PDP1	chr8	93911923	93931068
PDP1_chr8_93911923_93931068	0/0	t0014	2597	1	1	0	0	0	0	copy fasta	PDP1	chr8	93911923	93931068
PDP1_chr8_93911923_93931068	0/0	t0015	2597	1	0	1	0	0	0	copy fasta	PDP1	chr8	93911923	93931068
PDP1_chr8_93911923_93931068	0/0	t0016	2597	1	1	0	0	0	0	copy fasta	PDP1	chr8	93911923	93931068
PDP1_chr8_93911923_93931068	0/0	t0017	2597	1	0	0	0	0	1	copy fasta	PDP1	chr8	93911923	93931068
PDP1_chr8_93911923_93931068	0/0	t0018	2597	1	1	0	0	0	0	copy fasta	PDP1	chr8	93911923	93931068
PDP1_chr8_93911923_93931068	0/0	t0019	2597	1	0	0	1	0	0	copy fasta	PDP1	chr8	93911923	93931068
PDP1_chr8_93911923_93931068	0/0	t0020	2597	1	0	1	0	0	0	copy fasta	PDP1	chr8	93911923	93931068
PDP1_chr8_93911923_93931068	0/0	t0021	2597	1	0	0	1	0	0	copy fasta	PDP1	chr8	93911923	93931068
PDP1_chr8_93911923_93931068	0/0	t0022	2597	1	0	0	0	0	1	copy fasta	PDP1	chr8	93911923	93931068
PDP1_chr8_93911923_93931068	0/0	t0023	2597	1	0	1	0	0	0	copy fasta	PDP1	chr8	93911923	93931068