JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PDP1_chr8_93911923_93931068	0/0	t0024	2596	1	0	1	0	0	0	copy fasta	PDP1	chr8	93911923	93931068
PDP1_chr8_93911923_93931068	0/0	t0025	2597	1	0	0	1	0	0	copy fasta	PDP1	chr8	93911923	93931068
PDP2_chr16_66875515_66896101	0/1	t0001	5404	61	6	18	16	6	14	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0002	5408	33	2	3	19	6	3	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0003	5391	24	0	2	21	0	1	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0004	5400	22	2	7	6	1	6	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0005	5404	21	0	5	16	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0006	5404	16	0	0	16	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0007	5382	15	6	3	4	1	1	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0008	5395	11	0	1	10	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0009	5398	10	10	0	0	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0010	5384	9	9	0	0	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0011	5400	8	1	4	0	1	2	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0012	5393	7	2	0	0	0	5	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0013	5405	7	0	1	6	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0014	5393	6	6	0	0	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0015	5412	6	1	1	4	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0016	5394	5	5	0	0	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0017	5388	5	4	1	0	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0018	5401	4	0	0	3	0	1	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0019	5388	3	3	0	0	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0020	5381	3	2	1	0	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0021	5400	3	1	0	2	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0022	5388	2	2	0	0	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0023	5377	2	2	0	0	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0024	5389	2	2	0	0	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0025	5379	2	2	0	0	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0026	5384	2	2	0	0	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0027	5388	2	2	0	0	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0028	5378	2	2	0	0	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0029	5410	2	0	0	2	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0030	5409	2	0	0	1	0	1	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0031	5396	2	0	0	2	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0032	5403	2	0	2	0	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0033	5411	2	0	2	0	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	1/0	t0034	5408	2	0	1	0	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0035	5377	2	0	0	0	0	2	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0036	5394	1	0	0	0	0	1	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0037	5385	1	0	1	0	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0038	5389	1	1	0	0	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0039	5390	1	1	0	0	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0040	5402	1	1	0	0	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0041	5396	1	0	0	1	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0042	5387	1	0	1	0	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0043	5393	1	0	0	0	0	1	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0044	5391	1	1	0	0	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0045	5391	1	1	0	0	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0046	5395	1	1	0	0	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0047	5400	1	0	0	0	1	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0048	5392	1	1	0	0	0	0	copy fasta	PDP2	chr16	66875515	66896101