JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PDP2_chr16_66875515_66896101	0/0	t0049	5389	1	1	0	0	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0050	5376	1	1	0	0	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0051	5387	1	1	0	0	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0052	5388	1	1	0	0	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0053	5392	1	1	0	0	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0054	5384	1	0	0	0	0	1	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0055	5382	1	0	0	1	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0056	5381	1	0	0	1	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0057	5386	1	1	0	0	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0058	5385	1	1	0	0	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0059	5405	1	0	0	1	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0060	5405	1	0	0	1	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0061	5401	1	0	1	0	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0062	5404	1	0	1	0	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0063	5404	1	0	0	1	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0064	5404	1	0	0	1	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0065	5396	1	1	0	0	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0066	5400	1	0	1	0	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0067	5401	1	0	0	1	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0068	5400	1	1	0	0	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0069	5399	1	0	1	0	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0070	5403	1	0	1	0	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0071	5407	1	0	1	0	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0072	5408	1	0	0	1	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0073	5409	1	0	0	1	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0074	5407	1	0	0	1	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0075	5411	1	0	1	0	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0076	5412	1	0	0	0	0	1	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0077	5392	1	0	0	0	0	1	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0078	5400	1	1	0	0	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0079	5400	1	0	0	0	0	1	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0080	5404	1	1	0	0	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0081	5404	1	0	1	0	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0082	5404	1	0	0	1	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0083	5389	1	0	1	0	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	t0084	5388	1	0	1	0	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDPK1_chr16_2533021_2608188	0/1	t0001	5508	92	23	20	38	3	7	copy fasta	PDPK1	chr16	2533021	2608188
PDPK1_chr16_2533021_2608188	0/0	t0002	5498	11	11	0	0	0	0	copy fasta	PDPK1	chr16	2533021	2608188
PDPK1_chr16_2533021_2608188	0/0	t0003	5507	9	8	1	0	0	0	copy fasta	PDPK1	chr16	2533021	2608188
PDPK1_chr16_2533021_2608188	0/0	t0004	5508	9	1	5	1	1	1	copy fasta	PDPK1	chr16	2533021	2608188
PDPK1_chr16_2533021_2608188	0/0	t0005	5509	4	1	3	0	0	0	copy fasta	PDPK1	chr16	2533021	2608188
PDPK1_chr16_2533021_2608188	0/0	t0006	5508	4	0	4	0	0	0	copy fasta	PDPK1	chr16	2533021	2608188
PDPK1_chr16_2533021_2608188	0/0	t0007	5506	3	3	0	0	0	0	copy fasta	PDPK1	chr16	2533021	2608188
PDPK1_chr16_2533021_2608188	0/0	t0008	5508	3	3	0	0	0	0	copy fasta	PDPK1	chr16	2533021	2608188
PDPK1_chr16_2533021_2608188	0/0	t0009	5508	3	3	0	0	0	0	copy fasta	PDPK1	chr16	2533021	2608188
PDPK1_chr16_2533021_2608188	0/0	t0010	5508	3	1	0	0	2	0	copy fasta	PDPK1	chr16	2533021	2608188
PDPK1_chr16_2533021_2608188	0/0	t0011	5506	3	3	0	0	0	0	copy fasta	PDPK1	chr16	2533021	2608188
PDPK1_chr16_2533021_2608188	0/0	t0012	5508	3	0	0	3	0	0	copy fasta	PDPK1	chr16	2533021	2608188
PDPK1_chr16_2533021_2608188	0/0	t0013	5508	3	0	1	0	2	0	copy fasta	PDPK1	chr16	2533021	2608188
PDPK1_chr16_2533021_2608188	0/0	t0014	5508	2	0	0	0	0	2	copy fasta	PDPK1	chr16	2533021	2608188