JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PDPK1_chr16_2533021_2608188	0/0	t0015	5508	2	1	0	1	0	0	copy fasta	PDPK1	chr16	2533021	2608188
PDPK1_chr16_2533021_2608188	0/0	t0016	5508	2	2	0	0	0	0	copy fasta	PDPK1	chr16	2533021	2608188
PDPK1_chr16_2533021_2608188	0/0	t0017	5508	2	0	2	0	0	0	copy fasta	PDPK1	chr16	2533021	2608188
PDPK1_chr16_2533021_2608188	0/0	t0018	5525	2	2	0	0	0	0	copy fasta	PDPK1	chr16	2533021	2608188
PDPK1_chr16_2533021_2608188	0/0	t0019	5505	2	2	0	0	0	0	copy fasta	PDPK1	chr16	2533021	2608188
PDPK1_chr16_2533021_2608188	0/0	t0020	5519	1	0	1	0	0	0	copy fasta	PDPK1	chr16	2533021	2608188
PDPK1_chr16_2533021_2608188	0/0	t0021	5509	1	1	0	0	0	0	copy fasta	PDPK1	chr16	2533021	2608188
PDPK1_chr16_2533021_2608188	0/0	t0022	5509	1	1	0	0	0	0	copy fasta	PDPK1	chr16	2533021	2608188
PDPK1_chr16_2533021_2608188	0/0	t0023	5509	1	1	0	0	0	0	copy fasta	PDPK1	chr16	2533021	2608188
PDPK1_chr16_2533021_2608188	0/0	t0024	5509	1	0	1	0	0	0	copy fasta	PDPK1	chr16	2533021	2608188
PDPK1_chr16_2533021_2608188	0/0	t0025	5508	1	1	0	0	0	0	copy fasta	PDPK1	chr16	2533021	2608188
PDPK1_chr16_2533021_2608188	0/0	t0026	5506	1	1	0	0	0	0	copy fasta	PDPK1	chr16	2533021	2608188
PDPK1_chr16_2533021_2608188	0/0	t0027	5508	1	1	0	0	0	0	copy fasta	PDPK1	chr16	2533021	2608188
PDPK1_chr16_2533021_2608188	0/0	t0028	5514	1	1	0	0	0	0	copy fasta	PDPK1	chr16	2533021	2608188
PDPK1_chr16_2533021_2608188	0/0	t0029	5508	1	0	0	1	0	0	copy fasta	PDPK1	chr16	2533021	2608188
PDPK1_chr16_2533021_2608188	0/0	t0030	5506	1	0	0	1	0	0	copy fasta	PDPK1	chr16	2533021	2608188
PDPK1_chr16_2533021_2608188	0/0	t0031	5506	1	0	0	0	0	1	copy fasta	PDPK1	chr16	2533021	2608188
PDPK1_chr16_2533021_2608188	0/0	t0032	5508	1	0	1	0	0	0	copy fasta	PDPK1	chr16	2533021	2608188
PDPK1_chr16_2533021_2608188	1/0	t0033	5514	1	0	0	0	0	0	copy fasta	PDPK1	chr16	2533021	2608188
PDPK1_chr16_2533021_2608188	0/0	t0034	5508	1	1	0	0	0	0	copy fasta	PDPK1	chr16	2533021	2608188
PDPK1_chr16_2533021_2608188	0/0	t0035	5508	1	1	0	0	0	0	copy fasta	PDPK1	chr16	2533021	2608188
PDPK1_chr16_2533021_2608188	0/0	t0036	5508	1	0	1	0	0	0	copy fasta	PDPK1	chr16	2533021	2608188
PDPK1_chr16_2533021_2608188	0/0	t0037	5508	1	0	0	0	0	1	copy fasta	PDPK1	chr16	2533021	2608188
PDPK1_chr16_2533021_2608188	0/0	t0038	5526	1	1	0	0	0	0	copy fasta	PDPK1	chr16	2533021	2608188
PDPK1_chr16_2533021_2608188	0/0	t0039	5526	1	1	0	0	0	0	copy fasta	PDPK1	chr16	2533021	2608188
PDPK1_chr16_2533021_2608188	0/0	t0040	5508	1	0	0	1	0	0	copy fasta	PDPK1	chr16	2533021	2608188
PDPK1_chr16_2533021_2608188	0/0	t0041	5506	1	1	0	0	0	0	copy fasta	PDPK1	chr16	2533021	2608188
PDPN_chr1_13578832_13622957	0/1	t0001	2250	73	17	11	29	1	14	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	t0002	2251	64	10	3	45	2	4	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	t0003	2250	61	10	5	36	1	9	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	t0004	2246	50	2	13	26	1	8	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	t0005	2246	29	3	9	11	5	1	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	t0006	2251	20	1	8	10	1	0	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	t0007	2250	19	7	2	9	0	1	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	t0008	2250	19	0	0	19	0	0	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	t0009	2250	14	5	0	5	3	1	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	t0010	2250	7	4	1	2	0	0	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	t0011	2250	6	1	2	1	2	0	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	t0012	2246	6	1	3	0	1	1	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	t0013	2248	4	4	0	0	0	0	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	1/0	t0014	2249	4	0	2	0	0	1	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	t0015	2254	4	3	1	0	0	0	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	t0016	2247	3	0	0	3	0	0	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	t0017	2250	3	3	0	0	0	0	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	t0018	2250	3	0	0	3	0	0	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	t0019	2251	3	2	1	0	0	0	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	t0020	2253	3	0	0	3	0	0	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	t0021	2254	3	3	0	0	0	0	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	t0022	2251	3	3	0	0	0	0	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	t0023	2246	2	0	1	0	0	1	copy fasta	PDPN	chr1	13578832	13622957