JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PDPN_chr1_13578832_13622957	0/0	t0024	2252	2	0	0	0	0	2	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	t0025	2252	2	0	0	0	0	2	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	t0026	2248	2	2	0	0	0	0	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	t0027	2251	2	0	0	2	0	0	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	t0028	2250	2	0	2	0	0	0	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	t0029	2250	2	0	2	0	0	0	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	t0030	2246	1	0	0	0	0	1	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	t0031	2253	1	0	0	1	0	0	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	t0032	2250	1	0	0	1	0	0	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	t0033	2250	1	0	0	0	0	1	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	t0034	2250	1	1	0	0	0	0	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	t0035	2250	1	1	0	0	0	0	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	t0036	2251	1	0	1	0	0	0	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	t0037	2252	1	0	1	0	0	0	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	t0038	2250	1	0	0	1	0	0	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	t0039	2250	1	0	0	1	0	0	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	t0040	2252	1	1	0	0	0	0	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	t0041	2251	1	0	0	0	0	1	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	t0042	2249	1	0	0	1	0	0	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	t0043	2254	1	1	0	0	0	0	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	t0044	2251	1	0	0	1	0	0	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	t0045	2251	1	1	0	0	0	0	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	t0046	2250	1	0	0	1	0	0	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	t0047	2250	1	1	0	0	0	0	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	t0048	2251	1	0	0	1	0	0	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	t0049	2250	1	0	0	1	0	0	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	t0050	2250	1	0	0	0	0	1	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	t0051	2247	1	0	0	0	0	1	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	t0052	2250	1	0	0	1	0	0	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	t0053	2250	1	1	0	0	0	0	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	t0054	2253	1	1	0	0	0	0	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	t0055	2249	1	0	0	0	1	0	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	t0056	2251	1	1	0	0	0	0	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	t0057	2252	1	1	0	0	0	0	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	t0058	2250	1	1	0	0	0	0	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	t0059	2251	1	1	0	0	0	0	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	t0060	2251	1	1	0	0	0	0	copy fasta	PDPN	chr1	13578832	13622957
PDPR_chr16_70109332_70167537	0/0	t0001	5912	43	0	6	36	0	1	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0002	5910	42	11	1	28	0	2	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0003	5910	29	1	9	13	1	5	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0004	5910	24	1	2	21	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	1/0	t0005	5910	22	1	10	2	3	5	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0006	5912	10	1	4	3	1	1	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0007	5911	9	1	1	5	0	2	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0008	5910	7	1	4	0	0	2	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0009	5913	7	7	0	0	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0010	5910	5	1	0	1	2	1	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0011	5910	4	4	0	0	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0012	5913	4	4	0	0	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0013	5913	4	0	0	3	0	1	copy fasta	PDPR	chr16	70109332	70167537