JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PDPR_chr16_70109332_70167537	0/0	t0014	5912	4	0	2	0	1	1	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0015	5910	3	3	0	0	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0016	5910	3	3	0	0	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0017	5913	3	3	0	0	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0018	5908	3	3	0	0	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0019	5911	2	0	1	1	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0020	5910	2	1	0	0	0	1	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0021	5910	2	0	0	2	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0022	5911	2	0	0	2	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0023	5913	2	0	0	2	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0024	5913	2	2	0	0	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0025	5912	2	0	2	0	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0026	5911	1	1	0	0	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0027	5911	1	0	0	1	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0028	5908	1	0	0	1	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0029	5911	1	0	0	1	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0030	5910	1	0	0	1	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0031	5914	1	1	0	0	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0032	5910	1	0	0	1	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0033	5910	1	1	0	0	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0034	5910	1	1	0	0	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0035	5910	1	1	0	0	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0036	5910	1	1	0	0	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0037	5910	1	1	0	0	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0038	5913	1	0	1	0	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0039	5910	1	1	0	0	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0040	5910	1	1	0	0	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0041	5911	1	0	1	0	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0042	5910	1	0	0	0	0	1	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0043	5910	1	1	0	0	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0044	5910	1	1	0	0	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0045	5911	1	0	1	0	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0046	5911	1	0	0	1	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0047	5911	1	0	0	0	0	1	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0048	5910	1	0	0	1	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0049	5910	1	1	0	0	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0050	5910	1	0	0	1	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0051	5910	1	0	0	1	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0052	5910	1	0	0	0	0	1	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0053	5910	1	0	1	0	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0054	5910	1	0	1	0	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0055	5911	1	1	0	0	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0056	5911	1	0	0	1	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0057	5912	1	0	0	1	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0058	5911	1	1	0	0	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0059	5910	1	1	0	0	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0060	5912	1	0	0	1	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0061	5913	1	0	0	1	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0062	5912	1	0	0	1	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0063	5908	1	1	0	0	0	0	copy fasta	PDPR	chr16	70109332	70167537