JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PDPR_chr16_70109332_70167537	0/0	t0064	5908	1	1	0	0	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0065	5908	1	1	0	0	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0066	5913	1	1	0	0	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0067	5913	1	1	0	0	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0068	5913	1	1	0	0	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0069	5912	1	0	1	0	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0070	5908	1	0	0	1	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0071	5913	1	0	0	0	0	1	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0072	5913	1	0	1	0	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0073	5910	1	0	1	0	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	t0074	5913	1	1	0	0	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDRG1_chr20_31939337_31957046	1/1	t0001	1556	176	17	37	83	8	29	copy fasta	PDRG1	chr20	31939337	31957046
PDRG1_chr20_31939337_31957046	0/0	t0002	1556	144	67	30	26	6	15	copy fasta	PDRG1	chr20	31939337	31957046
PDRG1_chr20_31939337_31957046	0/0	t0003	1556	3	3	0	0	0	0	copy fasta	PDRG1	chr20	31939337	31957046
PDRG1_chr20_31939337_31957046	0/0	t0004	1556	2	0	1	1	0	0	copy fasta	PDRG1	chr20	31939337	31957046
PDRG1_chr20_31939337_31957046	0/0	t0005	1556	2	2	0	0	0	0	copy fasta	PDRG1	chr20	31939337	31957046
PDRG1_chr20_31939337_31957046	0/0	t0006	1556	2	2	0	0	0	0	copy fasta	PDRG1	chr20	31939337	31957046
PDRG1_chr20_31939337_31957046	0/0	t0007	1556	2	2	0	0	0	0	copy fasta	PDRG1	chr20	31939337	31957046
PDRG1_chr20_31939337_31957046	0/0	t0008	1556	1	1	0	0	0	0	copy fasta	PDRG1	chr20	31939337	31957046
PDRG1_chr20_31939337_31957046	0/0	t0009	1556	1	0	0	1	0	0	copy fasta	PDRG1	chr20	31939337	31957046
PDRG1_chr20_31939337_31957046	0/0	t0010	1556	1	0	0	0	0	1	copy fasta	PDRG1	chr20	31939337	31957046
PDRG1_chr20_31939337_31957046	0/0	t0011	1556	1	1	0	0	0	0	copy fasta	PDRG1	chr20	31939337	31957046
PDRG1_chr20_31939337_31957046	0/0	t0012	1556	1	0	1	0	0	0	copy fasta	PDRG1	chr20	31939337	31957046
PDRG1_chr20_31939337_31957046	0/0	t0013	1556	1	0	0	1	0	0	copy fasta	PDRG1	chr20	31939337	31957046
PDRG1_chr20_31939337_31957046	0/0	t0014	1556	1	1	0	0	0	0	copy fasta	PDRG1	chr20	31939337	31957046
PDRG1_chr20_31939337_31957046	0/0	t0015	1556	1	0	0	1	0	0	copy fasta	PDRG1	chr20	31939337	31957046
PDRG1_chr20_31939337_31957046	0/0	t0016	1556	1	0	0	1	0	0	copy fasta	PDRG1	chr20	31939337	31957046
PDRG1_chr20_31939337_31957046	0/0	t0017	1556	1	1	0	0	0	0	copy fasta	PDRG1	chr20	31939337	31957046
PDRG1_chr20_31939337_31957046	0/0	t0018	1556	1	0	1	0	0	0	copy fasta	PDRG1	chr20	31939337	31957046
PDRG1_chr20_31939337_31957046	0/0	t0019	1556	1	1	0	0	0	0	copy fasta	PDRG1	chr20	31939337	31957046
PDRG1_chr20_31939337_31957046	0/0	t0020	1556	1	0	0	0	0	1	copy fasta	PDRG1	chr20	31939337	31957046
PDS5A_chr4_39817863_39982911	1/0	t0001	3118	98	32	14	38	1	12	copy fasta	PDS5A	chr4	39817863	39982911
PDS5A_chr4_39817863_39982911	0/1	t0002	3118	75	16	31	12	3	12	copy fasta	PDS5A	chr4	39817863	39982911
PDS5A_chr4_39817863_39982911	0/0	t0003	3121	54	6	8	29	5	6	copy fasta	PDS5A	chr4	39817863	39982911
PDS5A_chr4_39817863_39982911	0/0	t0004	3118	42	0	3	33	2	4	copy fasta	PDS5A	chr4	39817863	39982911
PDS5A_chr4_39817863_39982911	0/0	t0005	3118	38	3	1	31	0	3	copy fasta	PDS5A	chr4	39817863	39982911
PDS5A_chr4_39817863_39982911	0/0	t0006	3118	10	9	1	0	0	0	copy fasta	PDS5A	chr4	39817863	39982911
PDS5A_chr4_39817863_39982911	0/0	t0007	3118	8	8	0	0	0	0	copy fasta	PDS5A	chr4	39817863	39982911
PDS5A_chr4_39817863_39982911	0/0	t0008	3115	8	0	0	8	0	0	copy fasta	PDS5A	chr4	39817863	39982911
PDS5A_chr4_39817863_39982911	0/0	t0009	3118	3	2	1	0	0	0	copy fasta	PDS5A	chr4	39817863	39982911
PDS5A_chr4_39817863_39982911	0/0	t0010	3121	3	0	1	0	0	2	copy fasta	PDS5A	chr4	39817863	39982911
PDS5A_chr4_39817863_39982911	0/0	t0011	3115	2	1	0	0	1	0	copy fasta	PDS5A	chr4	39817863	39982911
PDS5A_chr4_39817863_39982911	0/0	t0012	3118	2	0	0	2	0	0	copy fasta	PDS5A	chr4	39817863	39982911
PDS5A_chr4_39817863_39982911	0/0	t0013	3118	1	0	1	0	0	0	copy fasta	PDS5A	chr4	39817863	39982911
PDS5A_chr4_39817863_39982911	0/0	t0014	3118	1	1	0	0	0	0	copy fasta	PDS5A	chr4	39817863	39982911
PDS5A_chr4_39817863_39982911	0/0	t0015	3118	1	0	1	0	0	0	copy fasta	PDS5A	chr4	39817863	39982911
PDS5A_chr4_39817863_39982911	0/0	t0016	3118	1	0	0	1	0	0	copy fasta	PDS5A	chr4	39817863	39982911
PDS5A_chr4_39817863_39982911	0/0	t0017	3118	1	0	0	0	0	1	copy fasta	PDS5A	chr4	39817863	39982911
PDS5A_chr4_39817863_39982911	0/0	t0018	3121	1	0	0	1	0	0	copy fasta	PDS5A	chr4	39817863	39982911
PDS5A_chr4_39817863_39982911	0/0	t0019	3121	1	0	1	0	0	0	copy fasta	PDS5A	chr4	39817863	39982911