JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PDS5A_chr4_39817863_39982911	0/0	t0020	3118	1	0	1	0	0	0	copy fasta	PDS5A	chr4	39817863	39982911
PDS5A_chr4_39817863_39982911	0/0	t0021	3118	1	0	0	1	0	0	copy fasta	PDS5A	chr4	39817863	39982911
PDS5A_chr4_39817863_39982911	0/0	t0022	3118	1	0	0	1	0	0	copy fasta	PDS5A	chr4	39817863	39982911
PDS5A_chr4_39817863_39982911	0/0	t0023	3118	1	1	0	0	0	0	copy fasta	PDS5A	chr4	39817863	39982911
PDS5A_chr4_39817863_39982911	0/0	t0024	3115	1	0	0	1	0	0	copy fasta	PDS5A	chr4	39817863	39982911
PDS5A_chr4_39817863_39982911	0/0	t0025	3118	1	1	0	0	0	0	copy fasta	PDS5A	chr4	39817863	39982911
PDS5B_chr13_32581452_32783019	0/0	t0001	3135	72	11	13	38	0	10	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	t0002	3137	56	1	5	39	3	8	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/1	t0003	3135	46	3	9	25	4	4	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	t0004	3136	24	12	1	10	0	1	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	t0005	3134	14	12	1	1	0	0	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	t0006	3138	13	0	3	4	0	6	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	t0007	3136	9	5	0	4	0	0	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	t0008	3136	9	9	0	0	0	0	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	t0009	3136	7	1	4	1	0	1	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	t0010	3136	6	3	1	2	0	0	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	t0011	3134	5	2	0	2	0	1	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	t0012	3137	5	5	0	0	0	0	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	1/0	t0013	3129	4	0	1	0	2	0	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	t0014	3135	4	4	0	0	0	0	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	t0015	3135	3	0	3	0	0	0	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	t0016	3133	3	3	0	0	0	0	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	t0017	3135	3	3	0	0	0	0	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	t0018	3136	3	3	0	0	0	0	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	t0019	3137	3	0	0	3	0	0	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	t0020	3131	2	0	1	1	0	0	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	t0021	3133	2	0	2	0	0	0	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	t0022	3137	2	2	0	0	0	0	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	t0023	3135	2	0	0	1	0	1	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	t0024	3135	2	1	1	0	0	0	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	t0025	3137	2	0	0	2	0	0	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	t0026	3135	2	0	0	2	0	0	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	t0027	3136	1	0	0	1	0	0	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	t0028	3130	1	1	0	0	0	0	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	t0029	3135	1	0	1	0	0	0	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	t0030	3136	1	0	1	0	0	0	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	t0031	3135	1	0	0	0	1	0	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	t0032	3135	1	1	0	0	0	0	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	t0033	3135	1	1	0	0	0	0	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	t0034	3135	1	1	0	0	0	0	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	t0035	3135	1	1	0	0	0	0	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	t0036	3135	1	0	1	0	0	0	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	t0037	3136	1	1	0	0	0	0	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	t0038	3137	1	1	0	0	0	0	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	t0039	3136	1	0	0	0	0	1	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	t0040	3135	1	0	1	0	0	0	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	t0041	3133	1	0	0	0	0	1	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	t0042	3134	1	1	0	0	0	0	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	t0043	3135	1	0	0	1	0	0	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	t0044	3135	1	0	0	0	0	1	copy fasta	PDS5B	chr13	32581452	32783019