JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PDS5B_chr13_32581452_32783019	0/0	t0045	3135	1	0	0	1	0	0	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	t0046	3135	1	0	0	1	0	0	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	t0047	3136	1	0	1	0	0	0	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	t0048	3137	1	0	1	0	0	0	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	t0049	3135	1	0	0	0	0	1	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	t0050	3135	1	0	0	1	0	0	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	t0051	3136	1	1	0	0	0	0	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	t0052	3137	1	0	0	0	0	1	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	t0053	3136	1	1	0	0	0	0	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	t0054	3136	1	0	0	1	0	0	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	t0055	3137	1	0	1	0	0	0	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	t0056	3138	1	0	0	1	0	0	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	t0057	3138	1	0	0	0	0	1	copy fasta	PDS5B	chr13	32581452	32783019
PDSS1_chr10_26692701_26751798	1/1	t0001	337	353	80	53	162	13	43	copy fasta	PDSS1	chr10	26692701	26751798
PDSS1_chr10_26692701_26751798	0/0	t0002	337	44	0	24	14	5	1	copy fasta	PDSS1	chr10	26692701	26751798
PDSS1_chr10_26692701_26751798	0/0	t0003	337	8	7	1	0	0	0	copy fasta	PDSS1	chr10	26692701	26751798
PDSS1_chr10_26692701_26751798	0/0	t0004	341	5	5	0	0	0	0	copy fasta	PDSS1	chr10	26692701	26751798
PDSS1_chr10_26692701_26751798	0/0	t0005	337	3	3	0	0	0	0	copy fasta	PDSS1	chr10	26692701	26751798
PDSS1_chr10_26692701_26751798	0/0	t0006	337	1	0	0	1	0	0	copy fasta	PDSS1	chr10	26692701	26751798
PDSS1_chr10_26692701_26751798	0/0	t0007	337	1	0	0	1	0	0	copy fasta	PDSS1	chr10	26692701	26751798
PDSS1_chr10_26692701_26751798	0/0	t0008	337	1	1	0	0	0	0	copy fasta	PDSS1	chr10	26692701	26751798
PDSS2_chr6_107147562_107464564	1/1	t0001	2337	152	45	25	56	5	19	copy fasta	PDSS2	chr6	107147562	107464564
PDSS2_chr6_107147562_107464564	0/0	t0002	2338	43	1	9	23	1	9	copy fasta	PDSS2	chr6	107147562	107464564
PDSS2_chr6_107147562_107464564	0/0	t0003	2337	12	12	0	0	0	0	copy fasta	PDSS2	chr6	107147562	107464564
PDSS2_chr6_107147562_107464564	0/0	t0004	2337	10	0	0	10	0	0	copy fasta	PDSS2	chr6	107147562	107464564
PDSS2_chr6_107147562_107464564	0/0	t0005	2337	10	8	2	0	0	0	copy fasta	PDSS2	chr6	107147562	107464564
PDSS2_chr6_107147562_107464564	0/0	t0006	2337	9	4	5	0	0	0	copy fasta	PDSS2	chr6	107147562	107464564
PDSS2_chr6_107147562_107464564	0/0	t0007	2337	7	7	0	0	0	0	copy fasta	PDSS2	chr6	107147562	107464564
PDSS2_chr6_107147562_107464564	0/0	t0008	2337	3	3	0	0	0	0	copy fasta	PDSS2	chr6	107147562	107464564
PDSS2_chr6_107147562_107464564	0/0	t0009	2338	2	0	0	2	0	0	copy fasta	PDSS2	chr6	107147562	107464564
PDSS2_chr6_107147562_107464564	0/0	t0010	2337	2	1	1	0	0	0	copy fasta	PDSS2	chr6	107147562	107464564
PDSS2_chr6_107147562_107464564	0/0	t0011	2337	2	0	0	2	0	0	copy fasta	PDSS2	chr6	107147562	107464564
PDSS2_chr6_107147562_107464564	0/0	t0012	2337	2	2	0	0	0	0	copy fasta	PDSS2	chr6	107147562	107464564
PDSS2_chr6_107147562_107464564	0/0	t0013	2337	1	1	0	0	0	0	copy fasta	PDSS2	chr6	107147562	107464564
PDSS2_chr6_107147562_107464564	0/0	t0014	2337	1	1	0	0	0	0	copy fasta	PDSS2	chr6	107147562	107464564
PDSS2_chr6_107147562_107464564	0/0	t0015	2337	1	1	0	0	0	0	copy fasta	PDSS2	chr6	107147562	107464564
PDSS2_chr6_107147562_107464564	0/0	t0016	2337	1	1	0	0	0	0	copy fasta	PDSS2	chr6	107147562	107464564
PDSS2_chr6_107147562_107464564	0/0	t0017	2338	1	0	0	1	0	0	copy fasta	PDSS2	chr6	107147562	107464564
PDSS2_chr6_107147562_107464564	0/0	t0018	2337	1	1	0	0	0	0	copy fasta	PDSS2	chr6	107147562	107464564
PDX1_chr13_27915000_27931313	0/0	t0001	1742	136	5	29	92	1	9	copy fasta	PDX1	chr13	27915000	27931313
PDX1_chr13_27915000_27931313	1/0	t0002	1752	101	29	22	31	6	12	copy fasta	PDX1	chr13	27915000	27931313
PDX1_chr13_27915000_27931313	0/1	t0003	1752	81	4	10	51	1	14	copy fasta	PDX1	chr13	27915000	27931313
PDX1_chr13_27915000_27931313	0/0	t0004	1752	43	2	4	22	5	10	copy fasta	PDX1	chr13	27915000	27931313
PDX1_chr13_27915000_27931313	0/0	t0005	1749	25	20	4	0	1	0	copy fasta	PDX1	chr13	27915000	27931313
PDX1_chr13_27915000_27931313	0/0	t0006	1749	9	9	0	0	0	0	copy fasta	PDX1	chr13	27915000	27931313
PDX1_chr13_27915000_27931313	0/0	t0007	1703	7	0	6	0	0	1	copy fasta	PDX1	chr13	27915000	27931313
PDX1_chr13_27915000_27931313	0/0	t0008	1763	5	3	2	0	0	0	copy fasta	PDX1	chr13	27915000	27931313
PDX1_chr13_27915000_27931313	0/0	t0009	1693	4	4	0	0	0	0	copy fasta	PDX1	chr13	27915000	27931313
PDX1_chr13_27915000_27931313	0/0	t0010	1749	3	3	0	0	0	0	copy fasta	PDX1	chr13	27915000	27931313
PDX1_chr13_27915000_27931313	0/0	t0011	1752	3	3	0	0	0	0	copy fasta	PDX1	chr13	27915000	27931313