JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PDX1_chr13_27915000_27931313	0/0	t0012	1742	3	3	0	0	0	0	copy fasta	PDX1	chr13	27915000	27931313
PDX1_chr13_27915000_27931313	0/0	t0013	1752	2	2	0	0	0	0	copy fasta	PDX1	chr13	27915000	27931313
PDX1_chr13_27915000_27931313	0/0	t0014	1741	2	0	0	2	0	0	copy fasta	PDX1	chr13	27915000	27931313
PDX1_chr13_27915000_27931313	0/0	t0015	1751	1	0	0	1	0	0	copy fasta	PDX1	chr13	27915000	27931313
PDX1_chr13_27915000_27931313	0/0	t0016	1752	1	0	1	0	0	0	copy fasta	PDX1	chr13	27915000	27931313
PDX1_chr13_27915000_27931313	0/0	t0017	1752	1	1	0	0	0	0	copy fasta	PDX1	chr13	27915000	27931313
PDX1_chr13_27915000_27931313	0/0	t0018	1752	1	0	0	0	0	1	copy fasta	PDX1	chr13	27915000	27931313
PDX1_chr13_27915000_27931313	0/0	t0019	1749	1	1	0	0	0	0	copy fasta	PDX1	chr13	27915000	27931313
PDX1_chr13_27915000_27931313	0/0	t0020	1725	1	0	0	1	0	0	copy fasta	PDX1	chr13	27915000	27931313
PDX1_chr13_27915000_27931313	0/0	t0021	1752	1	0	0	0	0	1	copy fasta	PDX1	chr13	27915000	27931313
PDX1_chr13_27915000_27931313	0/0	t0022	1749	1	1	0	0	0	0	copy fasta	PDX1	chr13	27915000	27931313
PDX1_chr13_27915000_27931313	0/0	t0023	1703	1	0	0	1	0	0	copy fasta	PDX1	chr13	27915000	27931313
PDX1_chr13_27915000_27931313	0/0	t0024	1815	1	0	0	1	0	0	copy fasta	PDX1	chr13	27915000	27931313
PDXDC1_chr16_14970026_15043332	0/0	t0001	2235	79	6	20	40	2	11	copy fasta	PDXDC1	chr16	14970026	15043332
PDXDC1_chr16_14970026_15043332	0/0	t0002	2234	50	10	10	20	0	10	copy fasta	PDXDC1	chr16	14970026	15043332
PDXDC1_chr16_14970026_15043332	0/0	t0003	2232	41	17	1	18	1	4	copy fasta	PDXDC1	chr16	14970026	15043332
PDXDC1_chr16_14970026_15043332	0/1	t0004	2232	32	5	1	20	2	3	copy fasta	PDXDC1	chr16	14970026	15043332
PDXDC1_chr16_14970026_15043332	0/0	t0005	2234	32	9	9	10	1	3	copy fasta	PDXDC1	chr16	14970026	15043332
PDXDC1_chr16_14970026_15043332	0/0	t0006	2232	8	0	0	7	0	1	copy fasta	PDXDC1	chr16	14970026	15043332
PDXDC1_chr16_14970026_15043332	0/0	t0007	2234	6	0	0	6	0	0	copy fasta	PDXDC1	chr16	14970026	15043332
PDXDC1_chr16_14970026_15043332	0/0	t0008	2237	6	0	0	6	0	0	copy fasta	PDXDC1	chr16	14970026	15043332
PDXDC1_chr16_14970026_15043332	0/0	t0009	2235	5	0	1	2	0	2	copy fasta	PDXDC1	chr16	14970026	15043332
PDXDC1_chr16_14970026_15043332	0/0	t0010	2234	3	3	0	0	0	0	copy fasta	PDXDC1	chr16	14970026	15043332
PDXDC1_chr16_14970026_15043332	0/0	t0011	2232	3	3	0	0	0	0	copy fasta	PDXDC1	chr16	14970026	15043332
PDXDC1_chr16_14970026_15043332	0/0	t0012	2248	2	0	0	2	0	0	copy fasta	PDXDC1	chr16	14970026	15043332
PDXDC1_chr16_14970026_15043332	0/0	t0013	2234	1	0	0	1	0	0	copy fasta	PDXDC1	chr16	14970026	15043332
PDXDC1_chr16_14970026_15043332	0/0	t0014	2234	1	0	1	0	0	0	copy fasta	PDXDC1	chr16	14970026	15043332
PDXDC1_chr16_14970026_15043332	0/0	t0015	2235	1	1	0	0	0	0	copy fasta	PDXDC1	chr16	14970026	15043332
PDXDC1_chr16_14970026_15043332	0/0	t0016	2232	1	0	0	1	0	0	copy fasta	PDXDC1	chr16	14970026	15043332
PDXDC1_chr16_14970026_15043332	0/0	t0017	2235	1	1	0	0	0	0	copy fasta	PDXDC1	chr16	14970026	15043332
PDXDC1_chr16_14970026_15043332	0/0	t0018	2235	1	1	0	0	0	0	copy fasta	PDXDC1	chr16	14970026	15043332
PDXDC1_chr16_14970026_15043332	0/0	t0019	2234	1	0	0	0	0	1	copy fasta	PDXDC1	chr16	14970026	15043332
PDXDC1_chr16_14970026_15043332	0/0	t0020	2234	1	0	1	0	0	0	copy fasta	PDXDC1	chr16	14970026	15043332
PDXDC1_chr16_14970026_15043332	0/0	t0021	2234	1	0	0	1	0	0	copy fasta	PDXDC1	chr16	14970026	15043332
PDXDC1_chr16_14970026_15043332	0/0	t0022	2235	1	0	0	0	0	1	copy fasta	PDXDC1	chr16	14970026	15043332
PDXDC1_chr16_14970026_15043332	0/0	t0023	2232	1	0	0	1	0	0	copy fasta	PDXDC1	chr16	14970026	15043332
PDXDC1_chr16_14970026_15043332	0/0	t0024	2232	1	0	0	1	0	0	copy fasta	PDXDC1	chr16	14970026	15043332
PDXK_chr21_43714129_43767299	0/0	t0001	6403	57	0	11	38	3	5	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0002	6404	54	2	12	31	3	6	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0003	6405	40	6	9	18	1	6	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0004	6404	16	15	1	0	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0005	6395	16	7	8	1	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0006	6404	9	0	4	0	0	5	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0007	6404	9	9	0	0	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0008	6403	8	8	0	0	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/1	t0009	6404	7	0	2	0	1	3	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0010	6404	5	0	0	5	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0011	6404	4	0	4	0	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0012	6405	4	0	2	0	0	2	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0013	6395	4	3	1	0	0	0	copy fasta	PDXK	chr21	43714129	43767299