Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATAD3C_chr1_1444689_1475163	0/0	t0166	2623	1	0	0	1	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0167	2623	1	0	0	1	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0168	2624	1	0	0	1	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0169	2643	1	0	1	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0170	2642	1	0	1	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0171	2641	1	0	1	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0172	2640	1	0	1	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0173	2647	1	0	0	1	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0174	2643	1	0	1	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0175	2642	1	0	1	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0176	2641	1	0	0	0	1	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0177	2638	1	1	0	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0178	2635	1	1	0	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0179	2631	1	0	0	1	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0180	2630	1	0	1	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0181	2628	1	0	1	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0182	2627	1	0	0	1	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0183	2627	1	1	0	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0184	2644	1	0	0	1	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0185	2641	1	0	1	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0186	2640	1	1	0	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0187	2636	1	0	0	1	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0188	2637	1	0	0	1	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0189	2624	1	0	0	1	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0190	2623	1	0	0	0	0	1	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0191	2612	1	0	0	1	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0192	2631	1	1	0	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0193	2624	1	0	0	1	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0194	2624	1	0	0	1	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0195	2636	1	1	0	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	t0196	2627	1	0	0	1	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD5_chr17_30826966_30900869	1/1	t0001	1339	103	36	33	11	11	10	copy fasta	ATAD5	chr17	30826966	30900869
ATAD5_chr17_30826966_30900869	0/0	t0002	1339	60	7	11	32	0	10	copy fasta	ATAD5	chr17	30826966	30900869
ATAD5_chr17_30826966_30900869	0/0	t0003	1340	55	0	12	34	1	8	copy fasta	ATAD5	chr17	30826966	30900869
ATAD5_chr17_30826966_30900869	0/0	t0004	1339	27	21	6	0	0	0	copy fasta	ATAD5	chr17	30826966	30900869
ATAD5_chr17_30826966_30900869	0/0	t0005	1340	9	0	0	9	0	0	copy fasta	ATAD5	chr17	30826966	30900869
ATAD5_chr17_30826966_30900869	0/0	t0006	1339	8	7	0	0	0	1	copy fasta	ATAD5	chr17	30826966	30900869
ATAD5_chr17_30826966_30900869	0/0	t0007	1339	5	5	0	0	0	0	copy fasta	ATAD5	chr17	30826966	30900869
ATAD5_chr17_30826966_30900869	0/0	t0008	1339	4	4	0	0	0	0	copy fasta	ATAD5	chr17	30826966	30900869
ATAD5_chr17_30826966_30900869	0/0	t0009	1340	2	0	0	2	0	0	copy fasta	ATAD5	chr17	30826966	30900869
ATAD5_chr17_30826966_30900869	0/0	t0010	1339	2	2	0	0	0	0	copy fasta	ATAD5	chr17	30826966	30900869
ATAD5_chr17_30826966_30900869	0/0	t0011	1340	2	1	0	0	0	1	copy fasta	ATAD5	chr17	30826966	30900869
ATAD5_chr17_30826966_30900869	0/0	t0012	1340	2	0	0	2	0	0	copy fasta	ATAD5	chr17	30826966	30900869
ATAD5_chr17_30826966_30900869	0/0	t0013	1339	1	0	0	1	0	0	copy fasta	ATAD5	chr17	30826966	30900869
ATAD5_chr17_30826966_30900869	0/0	t0014	1339	1	0	1	0	0	0	copy fasta	ATAD5	chr17	30826966	30900869
ATAD5_chr17_30826966_30900869	0/0	t0015	1340	1	0	1	0	0	0	copy fasta	ATAD5	chr17	30826966	30900869
ATAD5_chr17_30826966_30900869	0/0	t0016	1341	1	0	0	1	0	0	copy fasta	ATAD5	chr17	30826966	30900869
ATAD5_chr17_30826966_30900869	0/0	t0017	1341	1	0	0	1	0	0	copy fasta	ATAD5	chr17	30826966	30900869
ATAD5_chr17_30826966_30900869	0/0	t0018	1340	1	1	0	0	0	0	copy fasta	ATAD5	chr17	30826966	30900869
ATAD5_chr17_30826966_30900869	0/0	t0019	1339	1	0	0	1	0	0	copy fasta	ATAD5	chr17	30826966	30900869