JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PDXK_chr21_43714129_43767299	0/0	t0014	6395	4	4	0	0	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0015	6402	4	4	0	0	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0016	6405	3	0	0	3	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0017	6405	3	3	0	0	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0018	6404	3	0	1	2	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0019	6406	3	0	0	3	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0020	6403	3	0	2	0	1	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0021	6403	3	0	1	2	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0022	6395	3	2	1	0	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0023	6395	2	0	0	0	2	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0024	6403	2	0	1	0	1	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0025	6403	2	2	0	0	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0026	6404	2	2	0	0	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0027	6405	2	0	0	2	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0028	6405	2	0	0	2	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0029	6395	2	0	1	0	1	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0030	6394	2	0	2	0	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0031	6404	2	2	0	0	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0032	6402	2	0	0	2	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0033	6403	2	0	0	0	0	2	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0034	6404	2	0	0	2	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0035	6403	2	0	0	2	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0036	6404	2	2	0	0	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0037	6404	1	1	0	0	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0038	6403	1	1	0	0	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0039	6402	1	1	0	0	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0040	6404	1	0	1	0	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0041	6405	1	1	0	0	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0042	6404	1	1	0	0	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0043	6404	1	0	0	1	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0044	6403	1	0	0	0	0	1	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0045	6404	1	0	0	1	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0046	6405	1	0	0	1	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0047	6403	1	0	0	1	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0048	6404	1	0	1	0	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0049	6404	1	0	0	1	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0050	6404	1	1	0	0	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0051	6404	1	0	1	0	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0052	6404	1	1	0	0	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0053	6403	1	0	1	0	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0054	6404	1	1	0	0	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0055	6404	1	1	0	0	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0056	6403	1	0	1	0	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0057	6404	1	1	0	0	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0058	6404	1	1	0	0	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0059	6395	1	0	1	0	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0060	6403	1	1	0	0	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0061	6404	1	1	0	0	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0062	6405	1	0	0	1	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0063	6404	1	0	0	1	0	0	copy fasta	PDXK	chr21	43714129	43767299