JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PDXK_chr21_43714129_43767299	0/0	t0064	6405	1	0	0	1	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0065	6405	1	0	0	1	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0066	6404	1	1	0	0	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0067	6404	1	0	1	0	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0068	6404	1	1	0	0	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0069	6404	1	1	0	0	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0070	6404	1	0	0	1	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0071	6404	1	0	0	1	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0072	6405	1	0	0	1	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0073	6405	1	0	0	1	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0074	6395	1	0	1	0	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0075	6395	1	0	1	0	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0076	6395	1	0	0	0	0	1	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0077	6403	1	0	0	0	0	1	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0078	6404	1	0	0	0	0	1	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0079	6403	1	1	0	0	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0080	6404	1	1	0	0	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0081	6395	1	0	1	0	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0082	6402	1	0	1	0	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0083	6404	1	1	0	0	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0084	6404	1	1	0	0	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0085	6395	1	0	1	0	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0086	6404	1	1	0	0	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0087	6405	1	1	0	0	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0088	6395	1	0	1	0	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0089	6403	1	0	0	0	0	1	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0090	6403	1	0	0	1	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0091	6403	1	0	0	1	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0092	6403	1	0	0	1	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0093	6403	1	0	0	1	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0094	6403	1	0	1	0	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0095	6404	1	0	0	0	0	1	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0096	6403	1	0	0	1	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0097	6403	1	0	0	1	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0098	6403	1	0	0	1	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	1/0	t0099	6403	1	0	0	0	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0100	6403	1	0	0	1	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0101	6403	1	0	0	0	0	1	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0102	6403	1	0	1	0	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0103	6403	1	0	0	0	1	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	t0104	6404	1	1	0	0	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXP_chr22_37653723_37671932	1/0	t0001	1122	293	63	58	133	10	28	copy fasta	PDXP	chr22	37653723	37671932
PDXP_chr22_37653723_37671932	0/1	t0002	1122	94	7	14	53	5	14	copy fasta	PDXP	chr22	37653723	37671932
PDXP_chr22_37653723_37671932	0/0	t0003	1122	16	13	2	0	1	0	copy fasta	PDXP	chr22	37653723	37671932
PDXP_chr22_37653723_37671932	0/0	t0004	1122	3	3	0	0	0	0	copy fasta	PDXP	chr22	37653723	37671932
PDXP_chr22_37653723_37671932	0/0	t0005	1122	2	2	0	0	0	0	copy fasta	PDXP	chr22	37653723	37671932
PDXP_chr22_37653723_37671932	0/0	t0006	1122	2	2	0	0	0	0	copy fasta	PDXP	chr22	37653723	37671932
PDXP_chr22_37653723_37671932	0/0	t0007	1122	1	1	0	0	0	0	copy fasta	PDXP	chr22	37653723	37671932
PDXP_chr22_37653723_37671932	0/0	t0008	1122	1	1	0	0	0	0	copy fasta	PDXP	chr22	37653723	37671932
PDXP_chr22_37653723_37671932	0/0	t0009	1122	1	1	0	0	0	0	copy fasta	PDXP	chr22	37653723	37671932