JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PDXP_chr22_37653723_37671932	0/0	t0010	1122	1	0	0	1	0	0	copy fasta	PDXP	chr22	37653723	37671932
PDXP_chr22_37653723_37671932	0/0	t0011	1122	1	1	0	0	0	0	copy fasta	PDXP	chr22	37653723	37671932
PDXP_chr22_37653723_37671932	0/0	t0012	1122	1	1	0	0	0	0	copy fasta	PDXP	chr22	37653723	37671932
PDXP_chr22_37653723_37671932	0/0	t0013	1122	1	0	0	1	0	0	copy fasta	PDXP	chr22	37653723	37671932
PDXP_chr22_37653723_37671932	0/0	t0014	1122	1	1	0	0	0	0	copy fasta	PDXP	chr22	37653723	37671932
PDYN_chr20_1973759_1999058	0/0	t0001	1792	176	18	20	114	1	23	copy fasta	PDYN	chr20	1973759	1999058
PDYN_chr20_1973759_1999058	1/1	t0002	1792	146	28	45	47	9	15	copy fasta	PDYN	chr20	1973759	1999058
PDYN_chr20_1973759_1999058	0/0	t0003	1792	21	17	2	0	2	0	copy fasta	PDYN	chr20	1973759	1999058
PDYN_chr20_1973759_1999058	0/0	t0004	1792	11	11	0	0	0	0	copy fasta	PDYN	chr20	1973759	1999058
PDYN_chr20_1973759_1999058	0/0	t0005	1792	6	6	0	0	0	0	copy fasta	PDYN	chr20	1973759	1999058
PDYN_chr20_1973759_1999058	0/0	t0006	1792	4	0	0	4	0	0	copy fasta	PDYN	chr20	1973759	1999058
PDYN_chr20_1973759_1999058	0/0	t0007	1792	4	0	4	0	0	0	copy fasta	PDYN	chr20	1973759	1999058
PDYN_chr20_1973759_1999058	0/0	t0008	1792	4	3	1	0	0	0	copy fasta	PDYN	chr20	1973759	1999058
PDYN_chr20_1973759_1999058	0/0	t0009	1792	4	4	0	0	0	0	copy fasta	PDYN	chr20	1973759	1999058
PDYN_chr20_1973759_1999058	0/0	t0010	1792	2	2	0	0	0	0	copy fasta	PDYN	chr20	1973759	1999058
PDYN_chr20_1973759_1999058	0/0	t0011	1792	2	0	2	0	0	0	copy fasta	PDYN	chr20	1973759	1999058
PDYN_chr20_1973759_1999058	0/0	t0012	1792	2	2	0	0	0	0	copy fasta	PDYN	chr20	1973759	1999058
PDYN_chr20_1973759_1999058	0/0	t0013	1792	2	0	0	2	0	0	copy fasta	PDYN	chr20	1973759	1999058
PDYN_chr20_1973759_1999058	0/0	t0014	1792	1	0	0	1	0	0	copy fasta	PDYN	chr20	1973759	1999058
PDYN_chr20_1973759_1999058	0/0	t0015	1792	1	1	0	0	0	0	copy fasta	PDYN	chr20	1973759	1999058
PDYN_chr20_1973759_1999058	0/0	t0016	1792	1	0	0	0	0	1	copy fasta	PDYN	chr20	1973759	1999058
PDYN_chr20_1973759_1999058	0/0	t0017	1792	1	0	0	0	0	1	copy fasta	PDYN	chr20	1973759	1999058
PDYN_chr20_1973759_1999058	0/0	t0018	1792	1	1	0	0	0	0	copy fasta	PDYN	chr20	1973759	1999058
PDYN_chr20_1973759_1999058	0/0	t0019	1792	1	1	0	0	0	0	copy fasta	PDYN	chr20	1973759	1999058
PDZD11_chrX_70281595_70294927	1/1	t0001	569	296	74	53	124	13	30	copy fasta	PDZD11	chrX	70281595	70294927
PDZD11_chrX_70281595_70294927	0/0	t0002	569	12	0	0	12	0	0	copy fasta	PDZD11	chrX	70281595	70294927
PDZD11_chrX_70281595_70294927	0/0	t0003	570	1	0	0	1	0	0	copy fasta	PDZD11	chrX	70281595	70294927
PDZD11_chrX_70281595_70294927	0/0	t0004	574	1	0	0	1	0	0	copy fasta	PDZD11	chrX	70281595	70294927
PDZD2_chr5_31634131_32115932	0/0	t0001	3461	66	16	18	19	2	11	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	1/1	t0002	3465	33	5	6	11	4	5	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	t0003	3461	12	1	3	7	0	1	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	t0004	3465	10	3	1	5	0	1	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	t0005	3465	9	1	2	6	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	t0006	3461	7	1	1	2	0	3	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	t0007	3465	7	6	1	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	t0008	3465	6	4	2	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	t0009	3461	6	6	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	t0010	3465	5	4	1	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	t0011	3465	4	0	0	0	0	4	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	t0012	3465	4	1	0	3	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	t0013	3461	3	3	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	t0014	3461	3	3	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	t0015	3461	2	2	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	t0016	3465	2	2	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	t0017	3461	2	2	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	t0018	3465	2	0	2	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	t0019	3461	2	2	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	t0020	3461	2	0	0	2	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	t0021	3461	1	0	0	1	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	t0022	3465	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932